PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7149_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 706aa MW: 82058.1 Da PI: 6.7247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7149_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	69	156	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Yn+YA+++GFsvrk ++k + +g + ++f+C+kegk+ ++++ ++ ++a rt+Cka+++ +++++g cra_locus_7149_iso_2_len_2783_ver_3 69 LYNDYAYKLGFSVRKGRQKCKAGSGIKYLKQFTCYKEGKKCDRRNV--NKCYSKADVRTNCKAMIEFRLNEKGG 140 7************************************9998766..89999***************** PP FAR1 76 wevtkleleHnHelap 91 w v+k +++HnHel+p cra_locus_7149_iso_2_len_2783_ver_3 141 WTVSKHVTNHNHELCP 156 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-19	69	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-28	278	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.691	556	594	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MENCGKSVVA SCDELDIADC DVFNSPGVDE DSLKPQECEE EEVSPVTEIC NEHSLVDTTV 60 RSEEDAFELY NDYAYKLGFS VRKGRQKCKA GSGIKYLKQF TCYKEGKKCD RRNVNKCYSK 120 ADVRTNCKAM IEFRLNEKGG WTVSKHVTNH NHELCPANQK HLMRSQRTAT KNHVGNFQEM 180 KDSGISIVDD LTVLKKRVEG SSFADFTSRD VYNSLRSVKS KDLDGEDTNA LIQIFRWRTE 240 NEDDFYFDFE VDCNSSLCSF FWRDGRMKSD YDLFGDLLVY DTTYRTNKYE MICSPFVGMD 300 NHCRNIMFGC GFLKSEKTES FIWLFNTFLK SMKGKHPITL MSNESVAMAA ATGVVFPETR 360 HRLCIWHISE NSKQHLMGLR SKEDFVKLFN HVLKHTDTVS EFEFHWKRLM DNFCCHNDKW 420 LNNLYNMREK WCPAFNKDFF SGGILSSQRS EATHHAIFRR LSKTSTLCDF YRIFVEVISE 480 WRSNENMEDF PCNQGHVEMA LPNSKLLQHA NGIYTIEAYL LFEEQFMKFP EYCQGLVLSN 540 DGQHVYEIWH PDMISIRHTV VFNEHTMCIS CTCKMFNEVG VLCSHCLRIM NFHCVQVIPD 600 KYILKRWKGN REIENAEKVN KKDIEVSSVW RRQMIRKFSD LISASELNVN ARECVQEGFK 660 TMSDKIVADV GSYYVNDLEN EGVSSNIKDP IGSYAKEERN VRKKNC

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MENCGKSVVA SCDELDIADC DVFNSPGVDE DSLKPQECEE EEVSPVTEIC NEHSLVDTTV  60
RSEEDAFELY NDYAYKLGFS VRKGRQKCKA GSGIKYLKQF TCYKEGKKCD RRNVNKCYSK  120
ADVRTNCKAM IEFRLNEKGG WTVSKHVTNH NHELCPANQK HLMRSQRTAT KNHVGNFQEM  180
KDSGISIVDD LTVLKKRVEG SSFADFTSRD VYNSLRSVKS KDLDGEDTNA LIQIFRWRTE  240
NEDDFYFDFE VDCNSSLCSF FWRDGRMKSD YDLFGDLLVY DTTYRTNKYE MICSPFVGMD  300
NHCRNIMFGC GFLKSEKTES FIWLFNTFLK SMKGKHPITL MSNESVAMAA ATGVVFPETR  360
HRLCIWHISE NSKQHLMGLR SKEDFVKLFN HVLKHTDTVS EFEFHWKRLM DNFCCHNDKW  420
LNNLYNMREK WCPAFNKDFF SGGILSSQRS EATHHAIFRR LSKTSTLCDF YRIFVEVISE  480
WRSNENMEDF PCNQGHVEMA LPNSKLLQHA NGIYTIEAYL LFEEQFMKFP EYCQGLVLSN  540
DGQHVYEIWH PDMISIRHTV VFNEHTMCIS CTCKMFNEVG VLCSHCLRIM NFHCVQVIPD  600
KYILKRWKGN REIENAEKVN KKDIEVSSVW RRQMIRKFSD LISASELNVN ARECVQEGFK  660
TMSDKIVADV GSYYVNDLEN EGVSSNIKDP IGSYAKEERN VRKKNC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197439.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14143	2	11