PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_70852_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 108aa MW: 12407.4 Da PI: 4.5313 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.9 | 1.1e-07 | 2 | 24 | 29 | 51 |
HHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 29 vLCdaevaviifsstgklyeyss 51 +LCd++va ++fss+g+l+e+s+ cra_locus_70852_iso_2_len_321_ver_3 2 ILCDVDVAALVFSSRGRLFEFSN 24 8********************95 PP | |||||||
2 | K-box | 26 | 3.8e-10 | 45 | 107 | 9 | 71 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++++ + + + ++a e Lq+ ++l d+++L + +L +Le+q+e++l++ R +K++ cra_locus_70852_iso_2_len_321_ver_3 45 VSAEVNDTEESKYASFMPMEELLQTVEKKLEEPDVDDLCITDLVHLENQVETALTQTRFRKTH 107 4555555666778888888899**999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.246 | 1 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-5 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-8 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.349 | 50 | 108 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
XILCDVDVAA LVFSSRGRLF EFSNTDSPTG IIHRYHNHMK AEDKVSAEVN DTEESKYASF 60 MPMEELLQTV EKKLEEPDVD DLCITDLVHL ENQVETALTQ TRFRKTHX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321013.1 | 2e-63 | agamous-like MADS-box protein AGL27 | ||||
Refseq | XP_010321014.1 | 2e-63 | agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A0V0HZX3 | 8e-62 | A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like | ||||
STRING | XP_009790268.1 | 1e-58 | (Nicotiana sylvestris) |