PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_70852_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 122aa MW: 13929.5 Da PI: 4.457 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.6 | 1.4e-07 | 2 | 24 | 29 | 51 |
HHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 29 vLCdaevaviifsstgklyeyss 51 +LCd++va ++fss+g+l+e+s+ cra_locus_70852_iso_1_len_363_ver_3 2 ILCDVDVAALVFSSRGRLFEFSN 24 8********************95 PP | |||||||
2 | K-box | 35.1 | 5.5e-13 | 45 | 121 | 9 | 85 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 ++++ + + + ++a e Lq+ +l d+ +Ls+ +L qLe+q++++l++ R +K++ll+e+i++l cra_locus_70852_iso_1_len_363_ver_3 45 VSAEVNDTEESKYASFMTMEELLQTVEMQLEEPDVADLSIADLVQLENQIQTALTQTRFTKTHLLIESIKNLHD 118 55555666677888889999999999999*99****************************************** PP K-box 83 kek 85 kek cra_locus_70852_iso_1_len_363_ver_3 119 KEK 121 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.246 | 1 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-5 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-8 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.933 | 50 | 122 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.5E-8 | 58 | 121 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
XILCDVDVAA LVFSSRGRLF EFSNTDSPTG IIHRYHNHMK AEDKVSAEVN DTEESKYASF 60 MTMEELLQTV EMQLEEPDVA DLSIADLVQL ENQIQTALTQ TRFTKTHLLI ESIKNLHDKE 120 KL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321013.1 | 3e-70 | agamous-like MADS-box protein AGL27 | ||||
Refseq | XP_010321014.1 | 3e-70 | agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A0V0HZX3 | 5e-68 | A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like | ||||
STRING | XP_009790268.1 | 1e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |