PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7074_iso_4 | ||||||||
Common Name | RR5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ARR-B | ||||||||
Protein Properties | Length: 643aa MW: 70411 Da PI: 6.0442 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.4 | 7.7e-29 | 218 | 271 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl cra_locus_7074_iso_4_len_2861_ver_3 218 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 271 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.6 | 9.2e-26 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 vl+vdD+p+ +++l+++l++ y ev+ + +e al+ll++++ +D+++ D+ mp+mdG++ll++ e +l cra_locus_7074_iso_4_len_2861_ver_3 38 VLVVDDDPTCLRILEKMLKNCLY-EVTKCNRAEIALKLLRDNRngYDIVISDVHMPDMDGFKLLEQVGLEM-DL 109 89*********************.***************999999**********************6644.8* PP EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109 p+i+++a ++++ + + + Ga d+l Kp+ +e+l + cra_locus_7074_iso_4_len_2861_ver_3 110 PVIMMSADDSKNVVMKGVTHGACDYLIKPVRIEALKN 146 *********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.2E-204 | 17 | 638 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 6.26E-35 | 35 | 160 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.0E-42 | 35 | 178 | No hit | No description |
SMART | SM00448 | 6.4E-30 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.725 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.2E-23 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.86E-27 | 39 | 151 | No hit | No description |
SuperFamily | SSF46689 | 3.23E-20 | 215 | 275 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.048 | 215 | 274 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 217 | 276 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-25 | 218 | 271 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-8 | 220 | 270 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MNLGGGQLVK SMAVPSSSAS WKSGGDGVSD QFPAGLRVLV VDDDPTCLRI LEKMLKNCLY 60 EVTKCNRAEI ALKLLRDNRN GYDIVISDVH MPDMDGFKLL EQVGLEMDLP VIMMSADDSK 120 NVVMKGVTHG ACDYLIKPVR IEALKNIWQH VVRKRKHEWK EKDYEQSGSV EDGERQQKPN 180 EDVDYSSSAN EGNWKNSKKR KDDEEDQEEK DDSSTLKKPR VVWSVELHQQ FVAAVNQLGI 240 DKAVPKKILE LMNVPGLTRE NVASHLQKYR LYLRRVSGVS QHQNGLNNSF MGTPDATFGS 300 MSSINGLDFQ ALAATGQIPA QSLASLQAAA IGRPTSKPTI SMPVVDQRNL FSFEPHKLRF 360 GEGQQQLNGH TKQISLLHGI PTNMEPKQLA SLNQSAQTFG GINMQVSSQA SQGNTLLMQM 420 TQPMSRAPML NENNASQISR LPSSVGQAIL SNGIPSGVLG RNGIVDSVRG PVYTPVSQTS 480 SLVDFSVSNS AELPGSTFPH ASNSGISSLT PKGMMQEEVN SEGKGSRGFP SSYDIFSELQ 540 QHKTQDWGLQ NVGSTFDGTQ HSSIQGSLEG GQNNPPNFGQ QFSSYMVDNS LRIKSERHPD 600 ANCQTNLFPQ QFGQDDLMSA LLKQEGIGSV ESDFGFDGYA LDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-23 | 217 | 277 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027115945.1 | 0.0 | two-component response regulator ARR2-like | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | Q71BZ1 | 0.0 | Q71BZ1_CATRO; Two-component response regulator | ||||
STRING | Solyc05g054390.2.1 | 0.0 | (Solanum lycopersicum) | ||||
STRING | XP_009591694.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |