PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7055_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 1031aa MW: 115310 Da PI: 6.8959

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7055_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.5e-29	720	770	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ cra_locus_7055_iso_6_len_6864_ver_3 720 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 770 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.268	709	790	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	722	770	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.81E-24	926	1015	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-24	930	1012	No hit	No description
SMART	SM00666	3.6E-29	933	1016	IPR000270	PB1 domain
PROSITE profile	PS51745	24.965	933	1016	IPR000270	PB1 domain
CDD	cd06407	1.14E-40	934	1014	No hit	No description
Pfam	PF00564	6.3E-19	934	1013	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
SSSEIFCKNC KEIFIDDVYA TDRTDWVLED NRKESLLEVP LLVFHIHTPS LLWFLIPFLF 60 HLGDLLGMFK MQVXDLKFSG MGDGAFKPNT TMLGSLPENT MDFGLIDELL IDGFWLETTD 120 DSNFWQPGPS TYLDNSSSFY SQTSDINITH FNSNLNQASF SEEEKHSNLT DNRYPIHIQG 180 DQVVAEQSPK KESILHSAST NHSKSFLVEG TEMNRRLWIG PNRNLTPNAL VRSRLVQAIE 240 YLKDSTRDKD VLIQLWVPVK RGGKKVLTTN NQPFSFNPNH KSLAEYRHVS KNYQFALEED 300 SKEFLGLPGR VFLKKLPEWT PDVRFFKREE YPRVNHAQQY NIGGSIALPV FERGSGACLG 360 VVEIISTSQM LSHRPELESV CKALEAVDLK SSDISVPPEA KDCNESYRVA LAEIKDVLQC 420 VCDLHKLPLA QTWVPCNQQG KGGCRHSDET YADCVSTVDS ACYVRDPQVW EFHVACSEHH 480 LLKGEGVAGG AFTTNQPCFA TDITAFSKTE YPLSHHAKLF HFCAAVAVRL RSIYTGSADF 540 VLEFFLPLDC RDAESQKQML NSLSLVIQQI CRSLRVVTDQ ELKEEVAPPT VKRKFSSGNK 600 FDKEESPASI SPSKKSSQDA SSWIAMATSM GDEGKGKGLA FSLDSHKKEA EGGEFKLTPY 660 WDKNPPELHQ MPSITDHTQI QQSSGLRENA SGSCEYSLTR EHHHYSGTRR ASERRRTKTE 720 KTISLQVLRQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV 780 IDSVQGAEGS IQLSSFYNNF PQLSSTSLAS PSQLPSNTSD DQQKLSPATT ASKSPSSSAS 840 HSSSSSFCCS VGATQSNFPV NSSSVKDDSS AEQCIETLKR AHSDAELQNM VQGGTKLLVR 900 SQSHKILPQD VSLEPLPPLP TKASNQLVQD GSTLRVKAAF GDEKIRFSIQ PNWGFETLLQ 960 EVRRRFNIDD ANRIDLKYLD DDSEWVLLTC DADLEECIDI HKSSRSRTIK LSLNLPYHRN 1020 LPGSFGSRVL S

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

SSSEIFCKNC KEIFIDDVYA TDRTDWVLED NRKESLLEVP LLVFHIHTPS LLWFLIPFLF  60
HLGDLLGMFK MQVXDLKFSG MGDGAFKPNT TMLGSLPENT MDFGLIDELL IDGFWLETTD  120
DSNFWQPGPS TYLDNSSSFY SQTSDINITH FNSNLNQASF SEEEKHSNLT DNRYPIHIQG  180
DQVVAEQSPK KESILHSAST NHSKSFLVEG TEMNRRLWIG PNRNLTPNAL VRSRLVQAIE  240
YLKDSTRDKD VLIQLWVPVK RGGKKVLTTN NQPFSFNPNH KSLAEYRHVS KNYQFALEED  300
SKEFLGLPGR VFLKKLPEWT PDVRFFKREE YPRVNHAQQY NIGGSIALPV FERGSGACLG  360
VVEIISTSQM LSHRPELESV CKALEAVDLK SSDISVPPEA KDCNESYRVA LAEIKDVLQC  420
VCDLHKLPLA QTWVPCNQQG KGGCRHSDET YADCVSTVDS ACYVRDPQVW EFHVACSEHH  480
LLKGEGVAGG AFTTNQPCFA TDITAFSKTE YPLSHHAKLF HFCAAVAVRL RSIYTGSADF  540
VLEFFLPLDC RDAESQKQML NSLSLVIQQI CRSLRVVTDQ ELKEEVAPPT VKRKFSSGNK  600
FDKEESPASI SPSKKSSQDA SSWIAMATSM GDEGKGKGLA FSLDSHKKEA EGGEFKLTPY  660
WDKNPPELHQ MPSITDHTQI QQSSGLRENA SGSCEYSLTR EHHHYSGTRR ASERRRTKTE  720
KTISLQVLRQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV  780
IDSVQGAEGS IQLSSFYNNF PQLSSTSLAS PSQLPSNTSD DQQKLSPATT ASKSPSSSAS  840
HSSSSSFCCS VGATQSNFPV NSSSVKDDSS AEQCIETLKR AHSDAELQNM VQGGTKLLVR  900
SQSHKILPQD VSLEPLPPLP TKASNQLVQD GSTLRVKAAF GDEKIRFSIQ PNWGFETLLQ  960
EVRRRFNIDD ANRIDLKYLD DDSEWVLLTC DADLEECIDI HKSSRSRTIK LSLNLPYHRN  1020
LPGSFGSRVL S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027151391.1	0.0	protein NLP2-like isoform X1
Refseq	XP_027184525.1	0.0	protein NLP2-like isoform X1
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2G9HB62	0.0	A0A2G9HB62_9LAMI; Uncharacterized protein
STRING	Migut.B00011.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67