PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7055_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 1000aa MW: 111874 Da PI: 7.0019

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7055_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.3e-29	690	740	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ cra_locus_7055_iso_1_len_3001_ver_3 690 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 740 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.268	679	760	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	692	740	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.57E-24	896	985	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-24	900	982	No hit	No description
SMART	SM00666	3.6E-29	903	986	IPR000270	PB1 domain
PROSITE profile	PS51745	24.965	903	986	IPR000270	PB1 domain
Pfam	PF00564	6.0E-19	904	983	IPR000270	PB1 domain
CDD	cd06407	1.58E-40	904	984	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
SSSEIFCKNC KEIFIDDVYA TDRTDWVLED NRKESLLEVP LLVFHIHTPS LLWFLIPFLF 60 HLGDLLGMFK MQVXDLKFSG MGDGAFKPNT TMLGSLPENT MDFGLIDELL IDGFWLETTD 120 DSNFWQPGSF SEEEKHSNLT DNRYPIHIQG DQVVAEQSPK KESILHSAST NHSKSFLVEG 180 TEMNRRLWIG PNRNLTPNAL VRSRLVQAIE YLKDSTRDKD VLIQLWVPVK RGGKKVLTTN 240 NQPFSFNPNH KSLAEYRHVS KNYQFALEED SKEFLGLPGR VFLKKLPEWT PDVRFFKREE 300 YPRVNHAQQY NIGGSIALPV FERGSGACLG VVEIISTSQM LSHRPELESV CKALEAVDLK 360 SSDISVPPEA KDCNESYRVA LAEIKDVLQC VCDLHKLPLA QTWVPCNQQG KGGCRHSDET 420 YADCVSTVDS ACYVRDPQVW EFHVACSEHH LLKGEGVAGG AFTTNQPCFA TDITAFSKTE 480 YPLSHHAKLF HFCAAVAVRL RSIYTGSADF VLEFFLPLDC RDAESQKQML NSLSLVIQQI 540 CRSLRVVTDQ ELKEEVAPPT VKRKFSSGNK FDKEESPASI SPSKKSSQDA SSWIAMATSM 600 GDEGKGKGLA FSLDSHKKEA EGGEFKLTPY WDKNPPELHQ MPSITDHTQI QQSSGLRENA 660 SGSCEYSLTR EHHHYSGTRR ASERRRTKTE KTISLQVLRQ YFAGSLKDAA KSIGVCPTTL 720 KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGAEGS IQLSSFYNNF PQLSSTSLAS 780 PSQLPSNTSD DQQKLSPATT ASKSPSSSAS HSSSSSFCCS VGATQSNFPV NSSSVKDDSS 840 AEQCIETLKR AHSDAELQNM VQGGTKLLVR SQSHKILPQD VSLEPLPPLP TKASNQLVQD 900 GSTLRVKAAF GDEKIRFSIQ PNWGFETLLQ EVRRRFNIDD ANRIDLKYLD DDSEWVLLTC 960 DADLEECIDI HKSSRSRTIK LSLNLPYHRN LPGSFGSRVL

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

SSSEIFCKNC KEIFIDDVYA TDRTDWVLED NRKESLLEVP LLVFHIHTPS LLWFLIPFLF  60
HLGDLLGMFK MQVXDLKFSG MGDGAFKPNT TMLGSLPENT MDFGLIDELL IDGFWLETTD  120
DSNFWQPGSF SEEEKHSNLT DNRYPIHIQG DQVVAEQSPK KESILHSAST NHSKSFLVEG  180
TEMNRRLWIG PNRNLTPNAL VRSRLVQAIE YLKDSTRDKD VLIQLWVPVK RGGKKVLTTN  240
NQPFSFNPNH KSLAEYRHVS KNYQFALEED SKEFLGLPGR VFLKKLPEWT PDVRFFKREE  300
YPRVNHAQQY NIGGSIALPV FERGSGACLG VVEIISTSQM LSHRPELESV CKALEAVDLK  360
SSDISVPPEA KDCNESYRVA LAEIKDVLQC VCDLHKLPLA QTWVPCNQQG KGGCRHSDET  420
YADCVSTVDS ACYVRDPQVW EFHVACSEHH LLKGEGVAGG AFTTNQPCFA TDITAFSKTE  480
YPLSHHAKLF HFCAAVAVRL RSIYTGSADF VLEFFLPLDC RDAESQKQML NSLSLVIQQI  540
CRSLRVVTDQ ELKEEVAPPT VKRKFSSGNK FDKEESPASI SPSKKSSQDA SSWIAMATSM  600
GDEGKGKGLA FSLDSHKKEA EGGEFKLTPY WDKNPPELHQ MPSITDHTQI QQSSGLRENA  660
SGSCEYSLTR EHHHYSGTRR ASERRRTKTE KTISLQVLRQ YFAGSLKDAA KSIGVCPTTL  720
KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGAEGS IQLSSFYNNF PQLSSTSLAS  780
PSQLPSNTSD DQQKLSPATT ASKSPSSSAS HSSSSSFCCS VGATQSNFPV NSSSVKDDSS  840
AEQCIETLKR AHSDAELQNM VQGGTKLLVR SQSHKILPQD VSLEPLPPLP TKASNQLVQD  900
GSTLRVKAAF GDEKIRFSIQ PNWGFETLLQ EVRRRFNIDD ANRIDLKYLD DDSEWVLLTC  960
DADLEECIDI HKSSRSRTIK LSLNLPYHRN LPGSFGSRVL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027088122.1	0.0	protein NLP2-like isoform X2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2G9HB62	0.0	A0A2G9HB62_9LAMI; Uncharacterized protein
STRING	Migut.B00011.1.p	0.0	(Erythranthe guttata)