PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_70498_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19630.1 Da PI: 9.0081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 11 | 60 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g cra_locus_70498_iso_1_len_816_ver_3 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 60 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-32 | 11 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-36 | 11 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-29 | 11 | 68 | No hit | No description |
Pfam | PF00847 | 2.8E-13 | 11 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-22 | 11 | 68 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.761 | 11 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASAAARESG HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARSLRG 60 SKAKTNFPSA PLPPTALSLD LNLPCSDHRW PPPPGRLVIG EFLRDVSFST AAASTANVVN 120 NASHHHGEAV AIANEQRPAV GSGNVSVGEN EYVYENPGMY FGIVRRGLPI DLNEPPPLWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 11 | 68 | 5 | 63 | ATERF1 |
3gcc_A | 9e-22 | 11 | 68 | 5 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105334.1 | 3e-68 | ethylene-responsive transcription factor 12 | ||||
Refseq | XP_027162537.1 | 3e-68 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 5e-41 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A068TU63 | 1e-63 | A0A068TU63_COFCA; Uncharacterized protein | ||||
STRING | Migut.M01117.1.p | 1e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |