PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_70498_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 180aa    MW: 19630.1 Da    PI: 9.0081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_70498_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-201160255
                                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  cra_locus_70498_iso_1_len_816_ver_3 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 60
                                         69*******.**********883....5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-321169IPR001471AP2/ERF domain
SMARTSM003807.3E-361174IPR001471AP2/ERF domain
CDDcd000181.82E-291168No hitNo description
PfamPF008472.8E-131160IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-221168IPR016177DNA-binding domain
PROSITE profilePS5103222.7611168IPR001471AP2/ERF domain
PRINTSPR003675.3E-111223IPR001471AP2/ERF domain
PRINTSPR003675.3E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASAAARESG HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARSLRG  60
SKAKTNFPSA PLPPTALSLD LNLPCSDHRW PPPPGRLVIG EFLRDVSFST AAASTANVVN  120
NASHHHGEAV AIANEQRPAV GSGNVSVGEN EYVYENPGMY FGIVRRGLPI DLNEPPPLWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-221168563ATERF1
3gcc_A9e-221168563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105334.13e-68ethylene-responsive transcription factor 12
RefseqXP_027162537.13e-68ethylene-responsive transcription factor 12
SwissprotQ94ID65e-41ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A068TU631e-63A0A068TU63_COFCA; Uncharacterized protein
STRINGMigut.M01117.1.p1e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165