PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6995_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 313aa MW: 34402.7 Da PI: 10.2234 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.4 | 1.2e-15 | 8 | 91 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrts 73 +W++ v L+ea++ ++ +r+klk+++We+v+k++ +++ +++++qCk+k+e+++kry+ + +++ cra_locus_6995_iso_8_len_977_ver_3 8 EWSEGAVSSLLEAYEAKWILRNRAKLKGQDWEDVAKHVsaraNSTKSSKTQTQCKNKIESMKKRYRSESATADA--- 81 5*************************************98878888999*******************999986... PP trihelix 74 essstcpyfdqle 86 s++p++ +l+ cra_locus_6995_iso_8_len_977_ver_3 82 ---SSWPLYPRLD 91 ...4699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.6E-19 | 6 | 91 | No hit | No description |
SuperFamily | SSF101447 | 1.62E-5 | 109 | 119 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
XDRLKRDEWS EGAVSSLLEA YEAKWILRNR AKLKGQDWED VAKHVSARAN STKSSKTQTQ 60 CKNKIESMKK RYRSESATAD ASSWPLYPRL DLLLRGNALA VPATVVSSPP PPPPPPPPPS 120 AASPHILVSQ QPLVVHHQLV TALPHGNINV GQNSRASNAF DRLPKDINED GVAVGTKISD 180 HESDKNAAAV ETDSSTPGIY SDKEKLKTTS LKNLKVRSSS VVEKKSKQRR ESSCVIAESI 240 RWLAEVVVRS EEARMETMKD LERMRAETEA KRGEIDLKRT QIIANTQLEI AKLLAAGISK 300 GSSVDSSLRI GRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027122682.1 | 1e-132 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A2P6SA48 | 1e-118 | A0A2P6SA48_ROSCH; Putative transcription factor Trihelix family | ||||
STRING | XP_010067722.1 | 1e-115 | (Eucalyptus grandis) |