PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6995_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 314aa MW: 34489.8 Da PI: 10.2234

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6995_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.4	1.2e-15	9	92	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrts 73 +W++ v L+ea++ ++ +r+klk+++We+v+k++ +++ +++++qCk+k+e+++kry+ + +++ cra_locus_6995_iso_2_len_979_ver_3 9 EWSEGAVSSLLEAYEAKWILRNRAKLKGQDWEDVAKHVsaraNSTKSSKTQTQCKNKIESMKKRYRSESATADA--- 82 5***********************************98878888999*****************999986... PP trihelix 74 essstcpyfdqle 86 s++p++ +l+ cra_locus_6995_iso_2_len_979_ver_3 83 ---SSWPLYPRLD 92 ...4699999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.7E-19	7	92	No hit	No description
SuperFamily	SSF101447	1.65E-5	110	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
XSDRLKRDEW SEGAVSSLLE AYEAKWILRN RAKLKGQDWE DVAKHVSARA NSTKSSKTQT 60 QCKNKIESMK KRYRSESATA DASSWPLYPR LDLLLRGNAL AVPATVVSSP PPPPPPPPPP 120 SAASPHILVS QQPLVVHHQL VTALPHGNIN VGQNSRASNA FDRLPKDINE DGVAVGTKIS 180 DHESDKNAAA VETDSSTPGI YSDKEKLKTT SLKNLKVRSS SVVEKKSKQR RESSCVIAES 240 IRWLAEVVVR SEEARMETMK DLERMRAETE AKRGEIDLKR TQIIANTQLE IAKLLAAGIS 300 KGSSVDSSLR IGRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027122682.1	1e-132	trihelix transcription factor ASIL1-like
TrEMBL	A0A2P6SA48	1e-119	A0A2P6SA48_ROSCH; Putative transcription factor Trihelix family
STRING	XP_010067722.1	1e-115	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20