PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6981_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 334aa MW: 37392.9 Da PI: 5.8397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6981_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53	6.3e-17	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L ++++YI+ Lq cra_locus_6981_iso_6_len_1516_ver_3 46 RSKHSETEQRRRCKINERFQILRDLIPEN----DQKRDKASFLLEVIQYIHFLQ 95 899***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-20	43	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.787	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-18	45	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-14	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.03E-16	46	99	No hit	No description
SMART	SM00353	4.3E-13	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MVRTVKSNQD EDEIDGEEFT SSAPQVSSQK VKLERKNNNQ KVNALRSKHS ETEQRRRCKI 60 NERFQILRDL IPENDQKRDK ASFLLEVIQY IHFLQEKIQM YEGPCQGWSS ESPKLMPWRS 120 NSGAVENFVD QPQFTKNGSS LEDNIAVATS LLSNSQNSIE SDLSGAVLYR PTDHTEVAGN 180 QEIPHNTPVQ ANLFEVVSVH PPQGSFCETN HLALDSRPQF WSDKPCSSGC AVPSYYSNHQ 240 EQLSTEDGEA NASSVYSQGL LSTLTHGLQS SGVDLSQASI SVQLDVRKRT NDQNTTSLIT 300 KDSSSIQQVA NYSSTFENSI HTSKKLKTNS SXRW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076362.1	1e-128	transcription factor BIM2-like isoform X1
TrEMBL	A0A2G9HJ80	1e-102	A0A2G9HJ80_9LAMI; Uncharacterized protein
STRING	VIT_14s0083g00930.t01	3e-95	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8947	18	21