PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6981_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 136aa MW: 15902 Da PI: 8.0552

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6981_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.2	1.3e-17	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L ++++YI+ Lq cra_locus_6981_iso_5_len_1437_ver_3 46 RSKHSETEQRRRCKINERFQILRDLIPEN----DQKRDKASFLLEVIQYIHFLQ 95 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.1E-22	43	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.787	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-19	45	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-15	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.03E-15	46	99	No hit	No description
SMART	SM00353	4.3E-13	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MVRTVKSNQD EDEIDGEEFT SSAPQVSSQK VKLERKNNNQ KVNALRSKHS ETEQRRRCKI 60 NERFQILRDL IPENDQKRDK ASFLLEVIQY IHFLQEKIQM YEGPCQGWSS ESPKLMPWVK 120 KFVPLCAFES GLAVES

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076362.1	2e-51	transcription factor BIM2-like isoform X1
Refseq	XP_027079157.1	2e-51	transcription factor BIM2-like isoform X1
Refseq	XP_027154338.1	2e-51	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	3e-37	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0V0I169	9e-50	A0A0V0I169_SOLCH; Putative transcription factor BIM2-like
STRING	XP_009594724.1	1e-45	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]