PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6981_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 306aa MW: 34300.6 Da PI: 6.6001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6981_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.1	5.6e-17	18	67	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L ++++YI+ Lq cra_locus_6981_iso_4_len_1323_ver_3 18 RSKHSETEQRRRCKINERFQILRDLIPEN----DQKRDKASFLLEVIQYIHFLQ 67 899***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.7E-21	15	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.787	16	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-18	17	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-16	18	71	No hit	No description
Pfam	PF00010	1.1E-14	18	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-13	22	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTVKLERKNN NQKVNALRSK HSETEQRRRC KINERFQILR DLIPENDQKR DKASFLLEVI 60 QYIHFLQEKI QMYEGPCQGW SSESPKLMPW RSNSGAVENF VDQPQFTKNG SSLEDNIAVA 120 TSLLSNSQNS IESDLSGAVL YRPTDHTEVA GNQEIPHNTP VQANLFEVVS VHPPQGSFCE 180 TNHLALDSRP QFWSDKPCSS GCAVPSYYSN HQEQLSTEDG EANASSVYSQ GLLSTLTHGL 240 QSSGVDLSQA SISVQLDVRK RTNDQNTTSL ITKDSSSIQQ VANYSSTFEN SIHTSKKLKT 300 NSSXRW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076362.1	1e-121	transcription factor BIM2-like isoform X1
TrEMBL	A0A2G9HJ80	1e-101	A0A2G9HJ80_9LAMI; Uncharacterized protein
STRING	VIT_14s0083g00930.t01	5e-96	(Vitis vinifera)