PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6981_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 311aa MW: 34996.2 Da PI: 7.0552

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6981_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.1	5.7e-17	23	72	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L ++++YI+ Lq cra_locus_6981_iso_1_len_1218_ver_3 23 RSKHSETEQRRRCKINERFQILRDLIPEN----DQKRDKASFLLEVIQYIHFLQ 72 899***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-20	20	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.787	21	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-18	22	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.89E-16	23	76	No hit	No description
Pfam	PF00010	1.1E-14	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-13	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
XLLKFLHRKL ERKNNNQKVN ALRSKHSETE QRRRCKINER FQILRDLIPE NDQKRDKASF 60 LLEVIQYIHF LQEKIQMYEG PCQGWSSESP KLMPWRSNSG AVENFVDQPQ FTKNGSSLED 120 NIAVATSLLS NSQNSIESDL SGAVLYRPTD HTEVAGNQEI PHNTPVQANL FEVVSVHPPQ 180 GSFCETNHLA LDSRPQFWSD KPCSSGCAVP SYYSNHQEQL STEDGEANAS SVYSQGLLST 240 LTHGLQSSGV DLSQASISVQ LDVRKRTNDQ NTTSLITKDS SSIQQVANYS STFENSIHTS 300 KKLKTNSSXR W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076362.1	1e-120	transcription factor BIM2-like isoform X1
TrEMBL	A0A2G9HJ80	1e-100	A0A2G9HJ80_9LAMI; Uncharacterized protein
STRING	VIT_14s0083g00930.t01	1e-95	(Vitis vinifera)