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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_6959_iso_6 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 50aa MW: 5553.14 Da PI: 7.3616 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 44.1 | 4.7e-14 | 22 | 46 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25
k+rlrWt+eLHerFv+av+qLGG++
cra_locus_6959_iso_6_len_1392_ver_3 22 KQRLRWTNELHERFVDAVAQLGGPD 46
79*********************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 21 | 47 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 9.68E-6 | 21 | 46 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 7.5E-10 | 22 | 47 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 50 aa Download sequence Send to blast |
MDFMGGGNNN MNNSNNSNLA SKQRLRWTNE LHERFVDAVA QLGGPDSKCL |
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00252 | DAP | Transfer from AT2G01060 | Download |
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| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020554068.1 | 7e-17 | uncharacterized protein LOC105175200 | ||||
| TrEMBL | M1ABL6 | 2e-17 | M1ABL6_SOLTU; Uncharacterized protein | ||||
| STRING | XP_008351138.1 | 5e-15 | (Malus domestica) | ||||
| STRING | XP_010059710.1 | 7e-15 | (Eucalyptus grandis) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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