PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6945_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 293aa    MW: 32841.8 Da    PI: 5.8752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6945_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-19149203256
                                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          rk+ ++tk+q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  cra_locus_6945_iso_7_len_1117_ver_3 149 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 203
                                          678899***********************************************98 PP
2HD-ZIP_I/II123.88.1e-40149238191
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+
  cra_locus_6945_iso_7_len_1117_ver_3 149 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLT 222
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLreel 91 
                                          +en+rL+ke +eL+ +l
  cra_locus_6945_iso_7_len_1117_ver_3 223 DENRRLQKELQELK-AL 238
                                          *************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-18136206IPR009057Homeodomain-like
PROSITE profilePS5007117.605145205IPR001356Homeobox domain
SMARTSM003896.8E-16147209IPR001356Homeobox domain
PfamPF000461.6E-16149203IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-18149203IPR009057Homeodomain-like
CDDcd000861.69E-16149206No hitNo description
PROSITE patternPS000270180203IPR017970Homeobox, conserved site
PfamPF021835.7E-10205239IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-25205248IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALDDFSSPG LVLGLGFPSS TAAAVAADNN KFVTKIRPKE TNPTTTTTVS FEPSLTLSLI  60
SGDFYDDDDD DKIAKKVEEI NNFNKNLNDN SVVVHDLLYR QDSAASSFSN VSVKREREIC  120
TTGSEELEVE RVISSSRVSD EDDDGSNGRK KLRLTKSQSA LLEESFKQHS TLNPKQKQDL  180
ARELNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCET LTDENRRLQK ELQELKALKL  240
SQPFYMQLPA ATLTMCPSCE RIGGENTGPK GPSFPMASKP HFYNPFTNQS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197205RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075542.11e-124homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-88HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D8YV981e-123A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGEOX917921e-120(Theobroma cacao)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]