PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6945_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32726.7 Da    PI: 6.3047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6945_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-19148202256
                                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          rk+ ++tk+q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  cra_locus_6945_iso_3_len_1114_ver_3 148 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 202
                                          678899***********************************************98 PP

2HD-ZIP_I/II123.88.1e-40148237191
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+
  cra_locus_6945_iso_3_len_1114_ver_3 148 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLT 221
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLreel 91 
                                          +en+rL+ke +eL+ +l
  cra_locus_6945_iso_3_len_1114_ver_3 222 DENRRLQKELQELK-AL 237
                                          *************9.54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-18135205IPR009057Homeodomain-like
PROSITE profilePS5007117.605144204IPR001356Homeobox domain
SMARTSM003896.8E-16146208IPR001356Homeobox domain
CDDcd000861.66E-16148205No hitNo description
PfamPF000461.6E-16148202IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-18148202IPR009057Homeodomain-like
PROSITE patternPS000270179202IPR017970Homeobox, conserved site
SMARTSM003402.0E-25204247IPR003106Leucine zipper, homeobox-associated
PfamPF021835.6E-10204238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MALDDFSSPG LVLGLGFPSS TAAAVAADNN KFVTKIRPKE TNPTTTTTVS FEPSLTLSLI  60
SGDFYDDDDD KIAKKVEEIN NFNKNLNDNS VVVHDLLYRQ DSAASSFSNV SVKREREICT  120
TGSEELEVER VISSSRVSDE DDDGSNGRKK LRLTKSQSAL LEESFKQHST LNPKQKQDLA  180
RELNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLQKE LQELKALKLS  240
QPFYMQLPAA TLTMCPSCER IGGENTGPKG PSFPMASKPH FYNPFTNQSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196204RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075542.11e-124homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-89HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9GQ011e-123A0A2G9GQ01_9LAMI; Transcription factor HEX
TrEMBLA0A4D8YV981e-124A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGEOX917921e-121(Theobroma cacao)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]