PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6945_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 292aa MW: 32726.7 Da PI: 6.3047 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 148 | 202 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k cra_locus_6945_iso_3_len_1114_ver_3 148 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 202 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 8.1e-40 | 148 | 237 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ cra_locus_6945_iso_3_len_1114_ver_3 148 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLT 221 69************************************************************************ PP HD-ZIP_I/II 75 eenerLekeveeLreel 91 +en+rL+ke +eL+ +l cra_locus_6945_iso_3_len_1114_ver_3 222 DENRRLQKELQELK-AL 237 *************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.21E-18 | 135 | 205 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.605 | 144 | 204 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-16 | 146 | 208 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-16 | 148 | 205 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 148 | 202 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-18 | 148 | 202 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 179 | 202 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.0E-25 | 204 | 247 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.6E-10 | 204 | 238 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MALDDFSSPG LVLGLGFPSS TAAAVAADNN KFVTKIRPKE TNPTTTTTVS FEPSLTLSLI 60 SGDFYDDDDD KIAKKVEEIN NFNKNLNDNS VVVHDLLYRQ DSAASSFSNV SVKREREICT 120 TGSEELEVER VISSSRVSDE DDDGSNGRKK LRLTKSQSAL LEESFKQHST LNPKQKQDLA 180 RELNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLQKE LQELKALKLS 240 QPFYMQLPAA TLTMCPSCER IGGENTGPKG PSFPMASKPH FYNPFTNQSA AC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 204 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075542.1 | 1e-124 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 7e-89 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2G9GQ01 | 1e-123 | A0A2G9GQ01_9LAMI; Transcription factor HEX | ||||
TrEMBL | A0A4D8YV98 | 1e-124 | A0A4D8YV98_SALSN; Homeobox-leucine zipper protein | ||||
STRING | EOX91792 | 1e-121 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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