PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6945_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 293aa MW: 32841.8 Da PI: 5.8752 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 149 | 203 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k cra_locus_6945_iso_2_len_1384_ver_3 149 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 203 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 8.1e-40 | 149 | 238 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ cra_locus_6945_iso_2_len_1384_ver_3 149 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLT 222 69************************************************************************ PP HD-ZIP_I/II 75 eenerLekeveeLreel 91 +en+rL+ke +eL+ +l cra_locus_6945_iso_2_len_1384_ver_3 223 DENRRLQKELQELK-AL 238 *************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.21E-18 | 136 | 206 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.605 | 145 | 205 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-16 | 147 | 209 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-16 | 149 | 203 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-18 | 149 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.69E-16 | 149 | 206 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 180 | 203 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.7E-10 | 205 | 239 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.0E-25 | 205 | 248 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MALDDFSSPG LVLGLGFPSS TAAAVAADNN KFVTKIRPKE TNPTTTTTVS FEPSLTLSLI 60 SGDFYDDDDD DKIAKKVEEI NNFNKNLNDN SVVVHDLLYR QDSAASSFSN VSVKREREIC 120 TTGSEELEVE RVISSSRVSD EDDDGSNGRK KLRLTKSQSA LLEESFKQHS TLNPKQKQDL 180 ARELNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCET LTDENRRLQK ELQELKALKL 240 SQPFYMQLPA ATLTMCPSCE RIGGENTGPK GPSFPMASKP HFYNPFTNQS AAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 205 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075542.1 | 1e-124 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-88 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A4D8YV98 | 1e-123 | A0A4D8YV98_SALSN; Homeobox-leucine zipper protein | ||||
STRING | EOX91792 | 1e-120 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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