PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6937_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LSD | ||||||||
Protein Properties | Length: 115aa MW: 12110.3 Da PI: 8.3292 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.6 | 2.3e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr +L+YPrGA++V+CalC+t+ cra_locus_6937_iso_6_len_763_ver_3 7 CTGCRSVLMYPRGATNVCCALCNTI 31 9**********************97 PP | |||||||
2 | zf-LSD1 | 48.7 | 1.2e-15 | 50 | 74 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA sVRC++C+tV cra_locus_6937_iso_6_len_763_ver_3 50 CGGCRTLLMYTRGAASVRCSCCHTV 74 ************************9 PP | |||||||
3 | zf-LSD1 | 52 | 1.2e-16 | 87 | 111 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V cra_locus_6937_iso_6_len_763_ver_3 87 CGNCRTTLMYPFGAPSVKCAVCHFV 111 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.2E-13 | 4 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.2E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.07E-5 | 19 | 109 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 2.6E-17 | 47 | 76 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-13 | 50 | 74 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-12 | 84 | 114 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-14 | 87 | 111 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MQSQLVCTGC RSVLMYPRGA TNVCCALCNT ITPVPPQVPA PGMDMSQLIC GGCRTLLMYT 60 RGAASVRCSC CHTVNLAPGT GFAHISCGNC RTTLMYPFGA PSVKCAVCHF VTNVN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028958841.1 | 1e-62 | protein LSD1-like | ||||
Swissprot | Q6ASS2 | 2e-52 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | I3S0N1 | 3e-63 | I3S0N1_LOTJA; Uncharacterized protein | ||||
STRING | Lus10008066 | 1e-62 | (Linum usitatissimum) |
Publications ? help Back to Top | |||
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