PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6928_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 29707.4 Da PI: 5.9541 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.9 | 2.5e-26 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkekd 73 +fY +Y++++GF+vr++++++s+ n+ +++++fvCskeg+re++ +++++ + ++tr gC a+l+v +++ cra_locus_6928_iso_3_len_1645_ver_3 78 EFYIAYGRRTGFTVRIHHNRRSRVNNMVISQDFVCSKEGFREKKYVQRKDRVLpSPPVTREGCPAMLRVALRDG 151 6******************************************988833333347899**************** PP FAR1 74 gkwevtkleleHnHela 90 kw vtk++++HnH+l cra_locus_6928_iso_3_len_1645_ver_3 152 VKWIVTKFVKDHNHSLL 168 **************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-23 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MENSLSKVFD SDESRSYLHI EKKDDDSFLE DELSTSMDFC IVEDDNCMEK LSENIPSSEN 60 ATEPQIGMEF SSKDDAREFY IAYGRRTGFT VRIHHNRRSR VNNMVISQDF VCSKEGFREK 120 KYVQRKDRVL PSPPVTREGC PAMLRVALRD GVKWIVTKFV KDHNHSLLSP GKVPWRGSGR 180 NVVSEDEKDQ RIRELTLELY NERQRCKRKC AAYEEKLQSL LKFIEDHTQH LSRTVEEIVE 240 LVKEIENKQV EDPN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 207 | RQRCKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092392.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_027092402.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_027178367.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A068U6N1 | 1e-137 | A0A068U6N1_COFCA; Uncharacterized protein | ||||
STRING | XP_009620541.1 | 1e-128 | (Nicotiana tomentosiformis) |