PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_69016_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 182aa MW: 20544.1 Da PI: 8.7367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_69016_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.8e-12	36	83	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka++L + ++YI+sLq cra_locus_69016_iso_2_len_544_ver_3 36 SHSLAERARRERISERMKILQDLVPGC----NKVIGKAMVLDEIINYIQSLQ 83 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.77E-10	30	87	No hit	No description
SuperFamily	SSF47459	2.75E-18	30	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.929	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-18	32	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	36	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-11	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
GTNSWTSMKP LEENQKPEPP KDYIHVRARR GQATDSHSLA ERARRERISE RMKILQDLVP 60 GCNKVIGKAM VLDEIINYIQ SLQGQVEFLS MKLEAVNSRM NPSIEGFPSK DLAVRTFEAN 120 QMIFGFQAPK ESSQGTEWLH MQIGTALERA XIIEMNPAVK PSTVKLDLLV QQHGAVFTCT 180 RX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071749.1	4e-81	transcription factor bHLH79-like isoform X2
Swissprot	Q69WS3	3e-66	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A2G9G1L8	8e-82	A0A2G9G1L8_9LAMI; Uncharacterized protein
STRING	Migut.I00100.1.p	1e-78	(Erythranthe guttata)