PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6851_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 519aa MW: 58436 Da PI: 6.449 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.4 | 1e-22 | 71 | 160 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg 74 Y++YA+ vGFsvrk k+++ +++i ++++Cskeg++++++++ + ++ ++ etrtgCka++ +++g cra_locus_6851_iso_5_len_1951_ver_3 71 LYCDYAYAVGFSVRKGKQYYFPGTNKIRAKWYCCSKEGFSNDKDDSsSGITSGHKLETRTGCKAMIYFACNNEG 144 7********************9999**************99999883445566899****************** PP FAR1 75 kwevtkleleHnHela 90 +w+ +k++++HnHe+a cra_locus_6851_iso_5_len_1951_ver_3 145 QWKASKFVKQHNHEMA 160 **************96 PP | |||||||
2 | FAR1 | 69.7 | 6.9e-22 | 256 | 341 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Y++YA+ +GFsvrk k+++ ++++ ++ + Cskeg+ +e+ + + +++ e rtgCka+++ + ++dgk cra_locus_6851_iso_5_len_1951_ver_3 256 VYCNYAHIMGFSVRKGKQYYFPGTKRVRSKSYFCSKEGFVNEDISV---ATHNKLEARTGCKAMINFTCDDDGK 326 7****************************************99877...8999********************* PP FAR1 76 wevtkleleHnHela 90 w+v+k++++HnH++a cra_locus_6851_iso_5_len_1951_ver_3 327 WKVAKFVKDHNHKMA 341 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-20 | 71 | 160 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 7.5E-19 | 256 | 341 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MINSGNASKK CRKLDNVISV DNYDDEEEVK WICLGCTGEE AVNIKWKAYI EELENLLGNQ 60 VLQCEEEAYK LYCDYAYAVG FSVRKGKQYY FPGTNKIRAK WYCCSKEGFS NDKDDSSSGI 120 TSGHKLETRT GCKAMIYFAC NNEGQWKASK FVKQHNHEMA ELYERQFLRS ARAIFASNYG 180 QAETMVSEIS NSGHEVQCST DVMYLDNDEE DEFICFHCTG GDETTVSDDS QDRDVDDLEK 240 KLLGQVVRCE EEAYKVYCNY AHIMGFSVRK GKQYYFPGTK RVRSKSYFCS KEGFVNEDIS 300 VATHNKLEAR TGCKAMINFT CDDDGKWKVA KFVKDHNHKM AEPHERHLLR SARSISDSAK 360 GNNISQAMML DLNKGIGKAG ISGGQSIGKG DTISEPHVGM EFQTEDAAKA FYDEYAKQVG 420 FLMHLMPNGP FEVGGRNDLV SAGYQPRSGA GCQAMILLSC DKSGKCIVSR FLRDHNHPLV 480 TFPTEVGYTM KFIAINVAPV AFCKAPCKDQ IILFWNMQL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027119563.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
TrEMBL | A0A068V922 | 0.0 | A0A068V922_COFCA; Uncharacterized protein | ||||
STRING | Migut.J01148.1.p | 2e-45 | (Erythranthe guttata) |