PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_6851_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 102aa MW: 11553.4 Da PI: 9.3507 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.5 | 3.8e-07 | 5 | 35 | 60 | 90 |
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 gC+a++ ++ +k+gk v+++ +HnH+l+ cra_locus_6851_iso_3_len_876_ver_3 5 AGCQAMILLSCDKSGKCIVSRFLRDHNHPLV 35 79***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-4 | 5 | 35 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
PRSGAGCQAM ILLSCDKSGK CIVSRFLRDH NHPLVTFPTE VGYTMDVKDR KIQELKMELQ 60 NKRKLCGFYR EQLAAVVKVV EEHTKEISRK HDLAVNNLQG VG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027164403.1 | 1e-32 | protein FAR1-RELATED SEQUENCE 12-like isoform X3 | ||||
TrEMBL | A0A061ERC2 | 3e-31 | A0A061ERC2_THECC; Far-red impaired responsive (FAR1) family protein | ||||
TrEMBL | A0A068V922 | 3e-31 | A0A068V922_COFCA; Uncharacterized protein | ||||
STRING | EOY04869 | 4e-32 | (Theobroma cacao) |