PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6851_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 552aa MW: 62342.1 Da PI: 6.6412

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6851_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.1e-22	71	160	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg 74 Y++YA+ vGFsvrk k+++ +++i ++++Cskeg++++++++ + ++ ++ etrtgCka++ +++g cra_locus_6851_iso_2_len_2549_ver_3 71 LYCDYAYAVGFSVRKGKQYYFPGTNKIRAKWYCCSKEGFSNDKDDSsSGITSGHKLETRTGCKAMIYFACNNEG 144 7******************9999**********99999883445566899************** PP FAR1 75 kwevtkleleHnHela 90 +w+ +k++++HnHe+a cra_locus_6851_iso_2_len_2549_ver_3 145 QWKASKFVKQHNHEMA 160 ************96 PP
2	FAR1	69.6	7.6e-22	256	341	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Y++YA+ +GFsvrk k+++ ++++ ++ + Cskeg+ +e+ + + +++ e rtgCka+++ + ++dgk cra_locus_6851_iso_2_len_2549_ver_3 256 VYCNYAHIMGFSVRKGKQYYFPGTKRVRSKSYFCSKEGFVNEDISV---ATHNKLEARTGCKAMINFTCDDDGK 326 7**************************************99877...8999***************** PP FAR1 76 wevtkleleHnHela 90 w+v+k++++HnH++a cra_locus_6851_iso_2_len_2549_ver_3 327 WKVAKFVKDHNHKMA 341 **********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-20	71	160	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.2E-19	256	341	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MINSGNASKK CRKLDNVISV DNYDDEEEVK WICLGCTGEE AVNIKWKAYI EELENLLGNQ 60 VLQCEEEAYK LYCDYAYAVG FSVRKGKQYY FPGTNKIRAK WYCCSKEGFS NDKDDSSSGI 120 TSGHKLETRT GCKAMIYFAC NNEGQWKASK FVKQHNHEMA ELYERQFLRS ARAIFASNYG 180 QAETMVSEIS NSGHEVQCST DVMYLDNDEE DEFICFHCTG GDETTVSDDS QDRDVDDLEK 240 KLLGQVVRCE EEAYKVYCNY AHIMGFSVRK GKQYYFPGTK RVRSKSYFCS KEGFVNEDIS 300 VATHNKLEAR TGCKAMINFT CDDDGKWKVA KFVKDHNHKM AEPHERHLLR SARSISDSAK 360 GNNISQAMML DLNKGIGKAG ISGGQSIGKG DTISEPHVGM EFQTEDAAKA FYDEYAKQVG 420 FLMHLMPNGP FEVGGRNDLV SAGYQPRSGA GCQAMILLSC DKSGKCIVSR FLRDHNHPLV 480 TFPTEVGYTM CLFLXDVKDR KIQELKMELQ NKRKLCGFYR EQLAAVVKVV EEHTKEISRK 540 HDLAVNNLQG VG

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MINSGNASKK CRKLDNVISV DNYDDEEEVK WICLGCTGEE AVNIKWKAYI EELENLLGNQ  60
VLQCEEEAYK LYCDYAYAVG FSVRKGKQYY FPGTNKIRAK WYCCSKEGFS NDKDDSSSGI  120
TSGHKLETRT GCKAMIYFAC NNEGQWKASK FVKQHNHEMA ELYERQFLRS ARAIFASNYG  180
QAETMVSEIS NSGHEVQCST DVMYLDNDEE DEFICFHCTG GDETTVSDDS QDRDVDDLEK  240
KLLGQVVRCE EEAYKVYCNY AHIMGFSVRK GKQYYFPGTK RVRSKSYFCS KEGFVNEDIS  300
VATHNKLEAR TGCKAMINFT CDDDGKWKVA KFVKDHNHKM AEPHERHLLR SARSISDSAK  360
GNNISQAMML DLNKGIGKAG ISGGQSIGKG DTISEPHVGM EFQTEDAAKA FYDEYAKQVG  420
FLMHLMPNGP FEVGGRNDLV SAGYQPRSGA GCQAMILLSC DKSGKCIVSR FLRDHNHPLV  480
TFPTEVGYTM CLFLXDVKDR KIQELKMELQ NKRKLCGFYR EQLAAVVKVV EEHTKEISRK  540
HDLAVNNLQG VG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119563.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBL	A0A068V922	0.0	A0A068V922_COFCA; Uncharacterized protein
STRING	Migut.J01148.1.p	2e-45	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14517	7	9