PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_68351_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 125aa MW: 14579.9 Da PI: 9.1597

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_68351_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	39	92	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA lgL+ rq+ +WFqNrRa++k cra_locus_68351_iso_1_len_373_ver_3 39 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLAIALGLQPRQIAIWFQNRRARWK 92 456899***********************************************9 PP
2	HD-ZIP_I/II	128.2	3.4e-41	38	124	1	87
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 ekkrrl+ eqvk+LE++Fe +kLeperK++la +Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++da+k cra_locus_68351_iso_1_len_373_ver_3 38 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLAIALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFDAIK 111 69********************************************************************** PP HD-ZIP_I/II 75 eenerLekeveeL 87 +en++L++++++L cra_locus_68351_iso_1_len_373_ver_3 112 AENDALQTQNQKL 124 *********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-19	14	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-20	30	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.86	34	94	IPR001356	Homeobox domain
SMART	SM00389	2.3E-17	37	98	IPR001356	Homeobox domain
Pfam	PF00046	6.9E-16	39	92	IPR001356	Homeobox domain
CDD	cd00086	7.83E-14	39	95	No hit	No description
PRINTS	PR00031	1.1E-5	65	74	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	74	90	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-12	94	124	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
XSFLGKRSMS FSGMEANNNC EENHGEDDLS DDGSQAGEKK RRLNMEQVKT LEKNFELGNK 60 LEPERKMQLA IALGLQPRQI AIWFQNRRAR WKTKQLEKDY EVLKRQFDAI KAENDALQTQ 120 NQKLX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	94	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016548012.1	1e-81	PREDICTED: homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	2e-61	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G2VLY1	3e-80	A0A2G2VLY1_CAPBA; Homeobox-leucine zipper protein HOX21
TrEMBL	Q6L434	1e-80	Q6L434_SOLDE; Homeobox-leucine zipper protein HAT7, putative (Fragment)
TrEMBL	Q6L452	1e-80	Q6L452_SOLDE; Homeobox-leucine zipper protein HAT7, putative
STRING	PGSC0003DMT400065805	3e-80	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]