PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6803_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 44068.6 Da PI: 7.0379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.5 | 0.00055 | 244 | 282 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq cra_locus_6803_iso_6_len_1643_ver_3 244 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 282 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.611 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-10 | 242 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.40E-6 | 242 | 286 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-7 | 246 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MAAGSPNWWN ININNNNMQQ QQQQQQQRPS PPPTSSFLSP PPILFPQYMP PLPLPPPPSS 60 SWTDDNQEQQ LPESWSQLLL GGLMVGEEDQ KSCLSISLKK LGNWEEQLVL QQQHEQQSST 120 MDHVKMENNN NMYGGGQHHH HHHHQNNNNN NGDQLLIQAA AKPNCSWSHH HQMNMPLQVS 180 SPTSCVTTLS SSNMLDFSSN KSDAPGRHPP SDHRSSECNS TATGGAAKKA RVQPSSTQST 240 FKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQSQIEALSL PYLGNKSGNI 300 RHQQQHVQGE RNCLFPEDPG QLLNENCLKR KGNSDQDSHE EAKKDLRSRG LCLVPISCTL 360 QVGSDNGADY WAPAIGGGGF RXTNTTPPVI GGDSTQGGHN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027068499.1 | 1e-152 | transcription factor bHLH68-like | ||||
Refseq | XP_027072446.1 | 1e-152 | transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 2e-89 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A068U432 | 1e-149 | A0A068U432_COFCA; Uncharacterized protein | ||||
STRING | XP_010100638.1 | 1e-141 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1519 | 22 | 47 |
Publications ? help Back to Top | |||
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