PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6803_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 345aa MW: 38572.8 Da PI: 7.712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6803_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00045	244	282	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq cra_locus_6803_iso_3_len_1362_ver_3 244 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 282 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-10	242	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.97E-6	242	286	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-7	246	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAAGSPNWWN ININNNNMQQ QQQQQQQRPS PPPTSSFLSP PPILFPQYMP PLPLPPPPSS 60 SWTDDNQEQQ LPESWSQLLL GGLMVGEEDQ KSCLSISLKK LGNWEEQLVL QQQHEQQSST 120 MDHVKMENNN NMYGGGQHHH HHHHQNNNNN NGDQLLIQAA AKPNCSWSHH HQMNMPLQVS 180 SPTSCVTTLS SSNMLDFSSN KSDAPGRHPP SDHRSSECNS TATGGAAKKA RVQPSSTQST 240 FKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQSQIEALSL PYLGNKSGNI 300 RHQQQHVQGE RNCLFPEDPG QLLNENCLKR KGNSDQVRTQ KTPYN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAAGSPNWWN ININNNNMQQ QQQQQQQRPS PPPTSSFLSP PPILFPQYMP PLPLPPPPSS  60
SWTDDNQEQQ LPESWSQLLL GGLMVGEEDQ KSCLSISLKK LGNWEEQLVL QQQHEQQSST  120
MDHVKMENNN NMYGGGQHHH HHHHQNNNNN NGDQLLIQAA AKPNCSWSHH HQMNMPLQVS  180
SPTSCVTTLS SSNMLDFSSN KSDAPGRHPP SDHRSSECNS TATGGAAKKA RVQPSSTQST  240
FKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQSQIEALSL PYLGNKSGNI  300
RHQQQHVQGE RNCLFPEDPG QLLNENCLKR KGNSDQVRTQ KTPYN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027068499.1	1e-119	transcription factor bHLH68-like
Refseq	XP_027072446.1	1e-119	transcription factor bHLH68-like isoform X1
TrEMBL	A0A068U432	1e-117	A0A068U432_COFCA; Uncharacterized protein
STRING	XP_002514268.1	1e-111	(Ricinus communis)