PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6793_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family DBB
Protein Properties Length: 295aa    MW: 31694.8 Da    PI: 4.375
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6793_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-062060438
                             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                         r C+++ +   + +C+ ++ +lC  C + +H        H+
  cra_locus_6793_iso_9_len_1088_ver_3 20 RACDTCRSAACTVYCKADSAYLCSGCDSRIHAAnkvasrHE 60
                                         67******99*********************6556666665 PP
2zf-B_box31.92.8e-1061107242
                             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                          + ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  cra_locus_6793_iso_9_len_1088_ver_3  61 RVWICESCEKAPAAFLCKADAASLCATCDSDIHSAnplarrHHRVPI 107
                                          5689*****************************66899999877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-81764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.211764IPR000315B-box-type zinc finger
CDDcd000211.74E-62064No hitNo description
PROSITE profilePS5011911.23460107IPR000315B-box-type zinc finger
PfamPF006431.8E-761107IPR000315B-box-type zinc finger
CDDcd000213.63E-863107No hitNo description
SMARTSM003363.6E-1065107IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
XGGGDLYTGG GGVRSNNWAR ACDTCRSAAC TVYCKADSAY LCSGCDSRIH AANKVASRHE  60
RVWICESCEK APAAFLCKAD AASLCATCDS DIHSANPLAR RHHRVPILPI PLTTGCLYGG  120
GGGGGPMIGH TATADEVEDD FNLTPVAAGE GGDDTTIDED DENEAASWLL LNPVKNYSSS  180
NEHNNGQGNN NNNIGGIFGG EGVDEYLDLV DYQQEDNNQF GDHEYVVSDE KNRYGVGAAE  240
CVVPSSRNGD GKEXXXXIII IIFISFRIIK VFNWDWIMRS LIILDMATLL QSLTP
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765376.18e-84PREDICTED: zinc finger protein CONSTANS-LIKE 2
RefseqXP_016462705.18e-84PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965022e-64COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A068U1F85e-83A0A068U1F8_COFCA; Uncharacterized protein
TrEMBLC0Z3T86e-83C0Z3T8_SOLTU; CONSTANS protein
STRINGXP_009765376.13e-83(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]