PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6793_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family DBB
Protein Properties Length: 295aa    MW: 31743.3 Da    PI: 4.823
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6793_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-061757438
                             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                         r C+++ +   + +C+ ++ +lC  C + +H        H+
  cra_locus_6793_iso_3_len_1076_ver_3 17 RACDTCRSAACTVYCKADSAYLCSGCDSRIHAAnkvasrHE 57
                                         67******99*********************6556666665 PP
2zf-B_box31.92.8e-1058104242
                             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                          + ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  cra_locus_6793_iso_3_len_1076_ver_3  58 RVWICESCEKAPAAFLCKADAASLCATCDSDIHSAnplarrHHRVPI 104
                                          5689*****************************66899999877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.211461IPR000315B-box-type zinc finger
SMARTSM003362.0E-81461IPR000315B-box-type zinc finger
CDDcd000219.07E-71761No hitNo description
PROSITE profilePS5011911.23457104IPR000315B-box-type zinc finger
PfamPF006431.8E-758104IPR000315B-box-type zinc finger
CDDcd000211.71E-860104No hitNo description
SMARTSM003363.6E-1062104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
GDLYTGGGGV RSNNWARACD TCRSAACTVY CKADSAYLCS GCDSRIHAAN KVASRHERVW  60
ICESCEKAPA AFLCKADAAS LCATCDSDIH SANPLARRHH RVPILPIPLT TGCLYGGGGG  120
GGPMIGHTAT ADEVEDDFNL TPVAAGEGGD DTTIDEDDEN EAASWLLLNP VKNYSSSNEH  180
NNGQGNNNNN IGGIFGGEGV DEYLDLVDYQ QEDNNQFGDH EYVVSDEKNR YGVGAAECVV  240
PSSRNGDGKE YHHHHHHLHQ FQNHQSFQLG LDYEISNNTG YGYPASITHT VSTLH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274795.12e-91CONSTANS
TrEMBLM1AML64e-94M1AML6_SOLTU; Uncharacterized protein
STRINGXP_009765376.18e-90(Nicotiana sylvestris)
STRINGPGSC0003DMT4000260658e-90(Solanum tuberosum)