PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6786_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 442aa    MW: 49643.8 Da    PI: 5.2394
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6786_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.91.2e-36141042101
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Fl+k+ye++ed+ +++++sws++g+sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++      
  cra_locus_6786_iso_3_len_2761_ver_3  14 FLTKTYEMVEDPMTNSVVSWSHSGRSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPDQ------ 81 
                                          9****************************************************************999...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkk 101
                                             weF++++F +g+k+ll++i+r+k
  cra_locus_6786_iso_3_len_2761_ver_3  82 ---WEFANEEFIRGQKHLLKNIHRRK 104
                                          ...*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-40798IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.54E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEGSNGGSNA PAPFLTKTYE MVEDPMTNSV VSWSHSGRSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPD QWEFANEEFI RGQKHLLKNI HRRKPIHSHS GNGGSAVPLS  120
DAERQEFEEE IERLKRDNSL LQSKLERHKQ ESQEFRVDVG SLGQRLKDID HRQRQLMAFL  180
AKLLEKPGFA SDLVSENHSR KRRLLISNYL YDEANNGESQ LVIFKEDNSS ALLPRLNVDL  240
IEKLDSSLSF WENLSYGICQ ASVEEAYDFG VAPQPPSVTV TEPPGSSGDS DVNLNPCSSN  300
SFHSSPSRDI RSSTELAGSS DHVDSPAISS LYLNLDSRPK SSGIDMNTSP SNLMDTDLEK  360
DRVEGNESAS APAAANDVFW QQFLTETPGS SDIPEVQSER RDLGSKKNDS SSLADIHKPW  420
WSRNNLDNLT QKMGHLTPAE KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-28310319129Heat shock factor protein 1
5d5v_B5e-28310319129Heat shock factor protein 1
5d5v_D5e-28310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172825.10.0heat stress transcription factor A-4b-like
TrEMBLA0A068VDZ20.0A0A068VDZ2_COFCA; Uncharacterized protein
STRINGXP_010242159.11e-163(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329