PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6749_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 196aa MW: 22053.1 Da PI: 10.623 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.4 | 1.3e-25 | 44 | 125 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 rWt+qe+l+Li++++ e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kk cra_locus_6749_iso_1_len_1267_ver_3 44 RWTRQEILVLIQGKKVAENRVRRGRtaglafgsaQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKKS 117 8**********************866677777779*************************************** PP trihelix 66 egekkrts 73 eg+k+++ cra_locus_6749_iso_1_len_1267_ver_3 118 EGKKRKRH 125 **999744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.4 | 44 | 110 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 44 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.0E-11 | 44 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAFEQLRLAP AAAVDDTSPA AAVNGRQLHL DVPDDAAKVP RLPRWTRQEI LVLIQGKKVA 60 ENRVRRGRTA GLAFGSAQVE PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKKSEGK 120 KRKRHTVQVD EEDETRNLQD QLVEVLERNG TLLSSQLESQ NIHLQLEREQ RKDHVNSLIS 180 VLNKLADALG RIADKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 123 | RKRWSNLAGDFKKKSEGKKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027100204.1 | 2e-55 | trihelix transcription factor ASR3 isoform X2 | ||||
Refseq | XP_027154551.1 | 2e-55 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 5e-50 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1Q3BVU8 | 3e-56 | A0A1Q3BVU8_CEPFO; Myb_DNA-bind_4 domain-containing protein | ||||
STRING | Gorai.002G021600.1 | 3e-53 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Publications ? help Back to Top | |||
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