PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6743_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 383aa MW: 41204.4 Da PI: 8.2581

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6743_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.6e-39	58	171	2	113
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ cra_locus_6743_iso_4_len_1304_ver_3 58 QPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsL 131 689******************************************************************99988 PP TCP 75 aesssssasnsssg........................kaaksaakskksqksaasalnlake 113 + s +ss+s+ s++ + e cra_locus_6743_iso_4_len_1304_ver_3 132 NISLRSSGSTMSAPysssyfgrninnyfnqrnilfssgD-----------------------E 171 888888888766665333344444333333333333330.......................3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.8E-39	62	200	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.529	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MATPNNNNLN NSLLPLQLLD QNSQQYPQEP SFSSSSSPNI TTNNVELLQT NTSQKKPQPK 60 RTSTKDRHTK VEGRGRRIRM PATCAARVFQ LTKELGHKSD GETIEWLLQQ AEPSVIAATG 120 TGTIPANFTS LNISLRSSGS TMSAPYSSSY FGRNINNYFN QRNILFSSGD EYRAHMSLPD 180 SKHLEWKGRS SYSSNSNSMS LNFPSLDDNA KQEVCEARLD VGEGENGMGI IRKRRAEEDE 240 DLTSMQNHHL GNNYMLQTTS SGSIMASQQG QIQAATLLML SNNPSNPWAF PSMTNNIMNR 300 GSSSMASSAL HFMNFPTQLA LIPGQHFGGG GGGGSSGGGV AFDGQLGMMR PMAGGGGGSG 360 EASNSHPGGG DGWHITTSSR NQS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MATPNNNNLN NSLLPLQLLD QNSQQYPQEP SFSSSSSPNI TTNNVELLQT NTSQKKPQPK  60
RTSTKDRHTK VEGRGRRIRM PATCAARVFQ LTKELGHKSD GETIEWLLQQ AEPSVIAATG  120
TGTIPANFTS LNISLRSSGS TMSAPYSSSY FGRNINNYFN QRNILFSSGD EYRAHMSLPD  180
SKHLEWKGRS SYSSNSNSMS LNFPSLDDNA KQEVCEARLD VGEGENGMGI IRKRRAEEDE  240
DLTSMQNHHL GNNYMLQTTS SGSIMASQQG QIQAATLLML SNNPSNPWAF PSMTNNIMNR  300
GSSSMASSAL HFMNFPTQLA LIPGQHFGGG GGGGSSGGGV AFDGQLGMMR PMAGGGGGSG  360
EASNSHPGGG DGWHITTSSR NQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027099930.1	3e-93	transcription factor TCP15-like isoform X1
Refseq	XP_027154284.1	3e-93	transcription factor TCP15-like isoform X1
TrEMBL	A0A068TWI9	1e-92	A0A068TWI9_COFCA; Uncharacterized protein
STRING	XP_009804589.1	3e-81	(Nicotiana sylvestris)