PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6732_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 864aa MW: 97755.5 Da PI: 6.2212

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6732_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.6e-17	68	142	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY++YA+++GFs+ + + ++sk +g i++ +f Cs+e +++++ ++ C+a+l+ +ke+ + cra_locus_6732_iso_9_len_3235_ver_3 68 SFYDAYARRIGFSTHVGQYSRSKPDGPIISWDFACSREVFKRKNVES--------------CNAMLRTEKEDAD 127 5**************************************999877..............********* PP FAR1 75 kwevtkleleHnHel 89 +w+vtk++++HnH+ cra_locus_6732_iso_9_len_3235_ver_3 128 RWVVTKFVEDHNHST 142 ***********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-14	68	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-30	278	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.066	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-11	556	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-8	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence Send to blast
MDDEVFEVVD VERGKRHKNG KLQAQPRKDG KQNFLGNSIE TEKNNQVICE NEKPYEGMVF 60 TSEEAAKSFY DAYARRIGFS THVGQYSRSK PDGPIISWDF ACSREVFKRK NVESCNAMLR 120 TEKEDADRWV VTKFVEDHNH STVSPSKVHY LRPRRHFSGA TKNSVETVTS QSDIMVALDG 180 NYTFYDSNLG VMSASPVEPN SATRNFSPVA PTNLVQPCNH KRTLGRDSHN LLNYFKKMQA 240 ENPGFFYAIQ LDDDNRMSNV FWADARSRTA YGHFGDAVIF DTAYRPNQFQ VPFAPFTGVN 300 HHGQMVLFGC ALILDESEAS FSWIFKTWLS AMNNRPPVSM TTDQDRAIKA AVNQVFPETR 360 HCICKWHILR EGQERLAHIY LAHPSFYGEL YSCINFTETI EDFECSWGSL LNKYSLQENE 420 WLQAVYNARK QWAPVYFRDT FFAALSSNHG ASSFFDGYVN QQSTLPVFFQ QYERALENAL 480 EREIEADLDT LCTEPVLKTP SPMEQQAANL YTKKIFAKFQ EELVETFVYT ANEIDSDGMV 540 SKFRVAKYEH DDKAFIVTLS VSDMKASCSC QMFEYSGILC RHIVTVFTVT NILTVPPDYI 600 LKRWTRNARV VLLSDEDVEK QCVDSLTLRF NNLCGEALKF AGEGSISMET YNAAMAALRE 660 GLSKISAVKE NVAKVKLPTS QSDISGLLID ENSKKATVST SDMCPPLWPW QDMVSNHINL 720 NDGGVPVTDL NQPSLAPLAI NRDGALADCS VVLTCFKSMT WVIETKNPAN KIAVINLKLQ 780 DYSKTPSGET DVQFRLTRVT LEPMLKSMAY INQQLSASAN RVAVINLKLQ DTKTSTGETE 840 VKFQVSRDTL GSMLRSMAYI REQL

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence Send to blast

MDDEVFEVVD VERGKRHKNG KLQAQPRKDG KQNFLGNSIE TEKNNQVICE NEKPYEGMVF  60
TSEEAAKSFY DAYARRIGFS THVGQYSRSK PDGPIISWDF ACSREVFKRK NVESCNAMLR  120
TEKEDADRWV VTKFVEDHNH STVSPSKVHY LRPRRHFSGA TKNSVETVTS QSDIMVALDG  180
NYTFYDSNLG VMSASPVEPN SATRNFSPVA PTNLVQPCNH KRTLGRDSHN LLNYFKKMQA  240
ENPGFFYAIQ LDDDNRMSNV FWADARSRTA YGHFGDAVIF DTAYRPNQFQ VPFAPFTGVN  300
HHGQMVLFGC ALILDESEAS FSWIFKTWLS AMNNRPPVSM TTDQDRAIKA AVNQVFPETR  360
HCICKWHILR EGQERLAHIY LAHPSFYGEL YSCINFTETI EDFECSWGSL LNKYSLQENE  420
WLQAVYNARK QWAPVYFRDT FFAALSSNHG ASSFFDGYVN QQSTLPVFFQ QYERALENAL  480
EREIEADLDT LCTEPVLKTP SPMEQQAANL YTKKIFAKFQ EELVETFVYT ANEIDSDGMV  540
SKFRVAKYEH DDKAFIVTLS VSDMKASCSC QMFEYSGILC RHIVTVFTVT NILTVPPDYI  600
LKRWTRNARV VLLSDEDVEK QCVDSLTLRF NNLCGEALKF AGEGSISMET YNAAMAALRE  660
GLSKISAVKE NVAKVKLPTS QSDISGLLID ENSKKATVST SDMCPPLWPW QDMVSNHINL  720
NDGGVPVTDL NQPSLAPLAI NRDGALADCS VVLTCFKSMT WVIETKNPAN KIAVINLKLQ  780
DYSKTPSGET DVQFRLTRVT LEPMLKSMAY INQQLSASAN RVAVINLKLQ DTKTSTGETE  840
VKFQVSRDTL GSMLRSMAYI REQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078717.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078718.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078719.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078720.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078721.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078722.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549440.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549441.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6R1D8	0.0	A0A2R6R1D8_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_13s0047g00330.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]