PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6727_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 513aa MW: 54243.8 Da PI: 7.1135

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6727_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.3	7.6e-40	140	231	5	102
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s cra_locus_6727_iso_4_len_1924_ver_3 140 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNIS 213 899***************************************************************99976777 PP TCP 78 ssssasnsssgkaaksaakskksqk 102 +ss+s+ s++ +sk++++ cra_locus_6727_iso_4_len_1924_ver_3 214 LRSSGSTISAP-------PSKSAPH 231 77776633333.......2222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-38	143	236	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	143	197	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MEFMEPHNKN QGGSSSSADH HHHHHQNLHH AHHQQQQQQN QNQNQEANIA SSLQLVSSLP 60 NQSQQQEQQS GSGGHGHGSS HTPSGHGPFM GSISIHSRNL LSSSSSSPSS NSTTTNPAST 120 STATAAANNN SAPSNTKVVK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG 180 ETIEWLLQQA EPAIIAATGT GTIPANFSTL NISLRSSGST ISAPPSKSAP HSFHGGLALS 240 HHANYEESFT HMLGFQHHPN LLPPEAIPNP SGENAGGGGS GGQDSADNYL RKRYREDLFK 300 EEGSTTGQGE GPESDSPSNK QFKGAGAGDV AGSSSSGNIL RHGNMMPATA MWAVTPAHSS 360 GTTGSTFWML PVSAAAGGGN NNGQTLATAV ASTSGSGPSP SETQMWPFPT ATGNSLQAPL 420 HFMPRFNIPA NLDFQGSRAS PLQLGSMLMQ QHQQQQPSQH LGLGISESNL GMLAALNAYS 480 NHQQQQQQQN HPMEHHHHQA TTDSGEDDQN SSQ

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MEFMEPHNKN QGGSSSSADH HHHHHQNLHH AHHQQQQQQN QNQNQEANIA SSLQLVSSLP  60
NQSQQQEQQS GSGGHGHGSS HTPSGHGPFM GSISIHSRNL LSSSSSSPSS NSTTTNPAST  120
STATAAANNN SAPSNTKVVK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG  180
ETIEWLLQQA EPAIIAATGT GTIPANFSTL NISLRSSGST ISAPPSKSAP HSFHGGLALS  240
HHANYEESFT HMLGFQHHPN LLPPEAIPNP SGENAGGGGS GGQDSADNYL RKRYREDLFK  300
EEGSTTGQGE GPESDSPSNK QFKGAGAGDV AGSSSSGNIL RHGNMMPATA MWAVTPAHSS  360
GTTGSTFWML PVSAAAGGGN NNGQTLATAV ASTSGSGPSP SETQMWPFPT ATGNSLQAPL  420
HFMPRFNIPA NLDFQGSRAS PLQLGSMLMQ QHQQQQPSQH LGLGISESNL GMLAALNAYS  480
NHQQQQQQQN HPMEHHHHQA TTDSGEDDQN SSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022895673.1	1e-149	transcription factor TCP8-like
Swissprot	Q9C518	9e-79	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2G9HCW8	1e-150	A0A2G9HCW8_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400064164	1e-146	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]