PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6727_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 452aa MW: 47787.2 Da PI: 7.7889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6727_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.8	9.6e-39	139	246	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+ ai+++tgt++++a+++ ++s cra_locus_6727_iso_1_len_2047_ver_3 139 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAESAIIAATGTGTIPANFStLNVS 212 899***************************************************************99987777 PP TCP 78 ssssasnsssg.................kaaksaakskksqksaasalnlak 112 +ss+ + s++ l +++ cra_locus_6727_iso_1_len_2047_ver_3 213 LRSSGTTISAPpsksaplflhggsaaaaM------------------LGFHH 246 77777744444333334444433333330..................33333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-37	142	275	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.598	142	196	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MEFMEPHNKN QGGSSSSADH HHHHHQNLHH AHHQQQQQQN QNQNQEANIA SSLQLVSSLP 60 NQSQQQEQQS GSGGHGHGSS HTPSGHGPFM GSISIHSRNL LSSSSSPSSN STTTNPASTS 120 TATAAANNNS APSNTKVVKK PSKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE 180 TIEWLLHQAE SAIIAATGTG TIPANFSTLN VSLRSSGTTI SAPPSKSAPL FLHGGSAAAA 240 MLGFHHQLTN SGFGQDPDDN FMKKRFREDG SGAASPSSSA KTPRTEVQDQ EPGTEIKPGS 300 AQSSSGFIPA QAMWAVAPAA ANVGNAFWML PVTGGSAAAA TTTTGLNQQE HQMWPYKAPG 360 MQRIAGYDFA GGGRFTPVQL GSMVLQQQSQ PVQQLGLGIT ETTNMGMLAS INAYGGSTSR 420 VDLGMNLEQH HHHQNQQPQG SDSGDENPKD SQ

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MEFMEPHNKN QGGSSSSADH HHHHHQNLHH AHHQQQQQQN QNQNQEANIA SSLQLVSSLP  60
NQSQQQEQQS GSGGHGHGSS HTPSGHGPFM GSISIHSRNL LSSSSSPSSN STTTNPASTS  120
TATAAANNNS APSNTKVVKK PSKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE  180
TIEWLLHQAE SAIIAATGTG TIPANFSTLN VSLRSSGTTI SAPPSKSAPL FLHGGSAAAA  240
MLGFHHQLTN SGFGQDPDDN FMKKRFREDG SGAASPSSSA KTPRTEVQDQ EPGTEIKPGS  300
AQSSSGFIPA QAMWAVAPAA ANVGNAFWML PVTGGSAAAA TTTTGLNQQE HQMWPYKAPG  360
MQRIAGYDFA GGGRFTPVQL GSMVLQQQSQ PVQQLGLGIT ETTNMGMLAS INAYGGSTSR  420
VDLGMNLEQH HHHQNQQPQG SDSGDENPKD SQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092108.1	1e-173	transcription factor TCP23-like
Refseq	XP_027094718.1	1e-173	transcription factor TCP23-like
Refseq	XP_027149317.1	1e-173	transcription factor TCP23
Swissprot	Q9LQF0	2e-67	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A068VGS0	1e-172	A0A068VGS0_COFCA; Uncharacterized protein
STRING	XP_009775051.1	1e-168	(Nicotiana sylvestris)