PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6720_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 158aa MW: 18336.8 Da PI: 9.6862

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6720_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.2	7.7e-54	4	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkr 73 lp GfrF+Ptd el+++yL+ k++g++ e+ +vi+evd++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r cra_locus_6720_iso_3_len_825_ver_3 4 LPLGFRFRPTDVELIDHYLRLKINGRHSEV-QVIPEVDVCKWEPWDLPrlSVIKTDDPEWFFFCPRDRKYPNGHR 77 699**********************999.99***********5337888889************* PP NAM 74 knratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nrat++gyWkatgkd++++s+ + +l+g+kktLvfy+grapkge+t+W+mheyr+ cra_locus_6720_iso_3_len_825_ver_3 78 SNRATDAGYWKATGKDRTIKSRksspsgqsNPQLIGMKKTLVFYRGRAPKGERTNWIMHEYRA 140 *****************9666655544455*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-57	3	147	IPR003441	NAC domain
PROSITE profile	PS51005	52.275	4	158	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	5	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MESLPLGFRF RPTDVELIDH YLRLKINGRH SEVQVIPEVD VCKWEPWDLP RLSVIKTDDP 60 EWFFFCPRDR KYPNGHRSNR ATDAGYWKAT GKDRTIKSRK SSPSGQSNPQ LIGMKKTLVF 120 YRGRAPKGER TNWIMHEYRA TETDLDGTAP DQVGAVFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-44	3	142	16	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-44	3	142	16	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-44	3	142	16	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-44	3	142	16	144	NO APICAL MERISTEM PROTEIN
3swm_A	3e-44	3	142	19	147	NAC domain-containing protein 19
3swm_B	3e-44	3	142	19	147	NAC domain-containing protein 19
3swm_C	3e-44	3	142	19	147	NAC domain-containing protein 19
3swm_D	3e-44	3	142	19	147	NAC domain-containing protein 19
3swp_A	3e-44	3	142	19	147	NAC domain-containing protein 19
3swp_B	3e-44	3	142	19	147	NAC domain-containing protein 19
3swp_C	3e-44	3	142	19	147	NAC domain-containing protein 19
3swp_D	3e-44	3	142	19	147	NAC domain-containing protein 19
4dul_A	3e-44	3	142	16	144	NAC domain-containing protein 19
4dul_B	3e-44	3	142	16	144	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070419.1	1e-93	protein NTM1-like 9
Refseq	XP_011070420.1	1e-93	protein NTM1-like 9
Refseq	XP_011081339.1	1e-93	protein NTM1-like 9 isoform X1
Refseq	XP_018730015.1	7e-93	PREDICTED: protein NTM1-like 9 isoform X1
Swissprot	F4JN35	1e-89	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A059C3W8	5e-92	A0A059C3W8_EUCGR; Uncharacterized protein
TrEMBL	A0A0M4FLS3	2e-92	A0A0M4FLS3_MANES; NAC transcription factors 88
STRING	cassava4.1_032341m	4e-93	(Manihot esculenta)
STRING	XP_010056056.1	3e-92	(Eucalyptus grandis)

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]