PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6705_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 158aa MW: 18744.9 Da PI: 10.2044 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl cra_locus_6705_iso_3_len_599_ver_3 13 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLLRCGKSCRLRWMNYL 60 799*****************99**********99************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.8e-16 | 66 | 106 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 rg+ T+eEdel++++++ lG++ W+ Ia +++ gR+++++k++ cra_locus_6705_iso_3_len_599_ver_3 66 RGNYTKEEDELIIKLHESLGNR-WSIIATHLP-GRSDNEIKNH 106 899*******************.*********.*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.227 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-29 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-10 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.97E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 15.805 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 66 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-9 | 68 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 68 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
XRTPCCDKSG MRKGTWTPEE DRKLIAYVTR YGCWNWRQLP KFAGLLRCGK SCRLRWMNYL 60 RPNLKRGNYT KEEDELIIKL HESLGNRWSI IATHLPGRSD NEIKNHXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXIIIIIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 13 | 106 | 7 | 99 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061165.1 | 1e-69 | transcription factor MYB4-like | ||||
Refseq | XP_027170157.1 | 1e-69 | transcription factor MYB4-like | ||||
Swissprot | Q7XBH4 | 7e-51 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A343CX98 | 1e-70 | A0A343CX98_CATRO; Myb24686 | ||||
STRING | Gorai.005G206800.1 | 3e-64 | (Gossypium raimondii) | ||||
STRING | XP_010095861.1 | 4e-64 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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