PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6684_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | CO-like | ||||||||
Protein Properties | Length: 347aa MW: 38513.4 Da PI: 5.4697 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 4e-07 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC +C ++ H+ cra_locus_6684_iso_3_len_1443_ver_3 11 KPCDSCKTTSASVFCRADSAFLCMSCDSKVHEA 43 67******99*******************9965 PP | |||||||
2 | zf-B_box | 25.8 | 2.2e-08 | 53 | 95 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC++C +H+ H++ cra_locus_6684_iso_3_len_1443_ver_3 53 VWVCEVCEQAPASVTCKADAAALCATCDRDIHSAnplarrHER 95 689*****************************65777777776 PP | |||||||
3 | CCT | 69.8 | 6.7e-24 | 283 | 326 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ cra_locus_6684_iso_3_len_1443_ver_3 283 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 326 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.338 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-9 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.0E-6 | 11 | 50 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.25E-7 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.58 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-6 | 53 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.89E-8 | 54 | 98 | No hit | No description |
SMART | SM00336 | 2.3E-10 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 283 | 325 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.2E-18 | 283 | 325 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGGESWSLTA KPCDSCKTTS ASVFCRADSA FLCMSCDSKV HEANKLASRH ARVWVCEVCE 60 QAPASVTCKA DAAALCATCD RDIHSANPLA RRHERFPVIP FYDSATAAKC SGTSADDTKC 120 LLDEAEEAEA ASWLLPTPNC NKDNADPETP EYKTADYLFK DMDPYLDIDL ISSDDQKPHI 180 IPQXXXXXXX XXXXXXXSXP VLGKNDHSPL QAPVVDGYPT YDMDYAAGSK PFMYNFTSQS 240 ISQSVSSSSM EVGVVPEHNP MADVSNSFSR NEGIPNPLTG IDREARVLRY REKRKNRKFE 300 KTIRYASRKA YAETRPRIKG RFAKRTEVEV ESLMSVEEAS YGVVPTY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084679.1 | 1e-175 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-92 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A068V3I5 | 1e-174 | A0A068V3I5_COFCA; Uncharacterized protein | ||||
STRING | XP_009590370.1 | 1e-159 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009618115.1 | 1e-159 | (Nicotiana tomentosiformis) |