PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6666_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LSD

Protein Properties

Length: 258aa MW: 28086.8 Da PI: 3.8301

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6666_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.4	4.9e-13	169	193	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLsYPrGA +V+C++C+tV cra_locus_6666_iso_2_len_2187_ver_3 169 CGTCRQLLSYPRGAQYVQCSSCQTV 193 ************************9 PP
2	zf-LSD1	39.6	8.9e-13	207	231	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++lL+YP+GApsV+C++C +V cra_locus_6666_iso_2_len_2187_ver_3 207 CGSCGVLLMYPYGAPSVKCSSCCFV 231 **********************776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.4E-16	166	196	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.0E-11	169	193	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.6E-9	204	232	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.8E-11	207	231	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAEEKENEGG EEEEDDDDDG PPPGFHFITP QAQKEIVKED KDEEEVEDGE GDDDEDSDGP 60 PPGWSSILPP SQQIQTSDIY VEMFGEQDDV EDDDGPPPGW DMPLPTSQLA EAIPSDMEMK 120 CKQEETKAED GAQPVEQSTP VSQSLPPTPP LPPSSTPTLS ASEKGQMICG TCRQLLSYPR 180 GAQYVQCSSC QTVNLVLEAH QVGQVKCGSC GVLLMYPYGA PSVKCSSCCF VTEIGDHNKR 240 PPLSVQQQQL RPPVNRVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027111779.1	9e-74	protein LOL2-like
TrEMBL	A0A068TTF7	2e-68	A0A068TTF7_COFCA; Uncharacterized protein
STRING	XP_009765270.1	6e-58	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23