PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6666_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LSD | ||||||||
Protein Properties | Length: 254aa MW: 27596.3 Da PI: 3.8465 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.4 | 4.8e-13 | 165 | 189 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLsYPrGA +V+C++C+tV cra_locus_6666_iso_1_len_1788_ver_3 165 CGTCRQLLSYPRGAQYVQCSSCQTV 189 ************************9 PP | |||||||
2 | zf-LSD1 | 39.6 | 8.7e-13 | 203 | 227 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++lL+YP+GApsV+C++C +V cra_locus_6666_iso_1_len_1788_ver_3 203 CGSCGVLLMYPYGAPSVKCSSCCFV 227 **********************776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 9.2E-16 | 162 | 192 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.9E-11 | 165 | 189 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.6E-9 | 200 | 228 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.8E-11 | 203 | 227 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAEEKENEGG EEEEDDDDDG PPPGFHFITP QAQKEIVKED KDEEEVEDGE GDDDEDSDGP 60 PPGWSSILPP SQQIQTSEMF GEQDDVEDDD GPPPGWDMPL PTSQLAEAIP SDMEMKCKQE 120 ETKAEDGAQP VEQSTPVSQS LPPTPPLPPS STPTLSASEK GQMICGTCRQ LLSYPRGAQY 180 VQCSSCQTVN LVLEAHQVGQ VKCGSCGVLL MYPYGAPSVK CSSCCFVTEI GDHNKRPPLS 240 VQQQQLRPPV NRVH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027111779.1 | 2e-72 | protein LOL2-like | ||||
TrEMBL | A0A068TTF7 | 3e-67 | A0A068TTF7_COFCA; Uncharacterized protein | ||||
STRING | XP_009765270.1 | 1e-56 | (Nicotiana sylvestris) |