PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_659_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28212 Da PI: 9.0784 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 15 | 65 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s cra_locus_659_iso_7_len_817_ver_3 15 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 65 79***********************************************96 PP | |||||||
2 | K-box | 94.4 | 1.8e-31 | 95 | 182 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++ s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++l+l+q+ +lq+ke++l+ cra_locus_659_iso_7_len_817_ver_3 95 QEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDLQRKEQALN 170 55689*********************************************************************** PP K-box 89 eenkaLrkklee 100 e+nk+L+++l+e cra_locus_659_iso_7_len_817_ver_3 171 EANKSLKQRLME 182 ********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.515 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-41 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.23E-33 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.46E-45 | 8 | 82 | No hit | No description |
PRINTS | PR00404 | 8.9E-33 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 9 | 63 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.4E-26 | 95 | 180 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.263 | 96 | 187 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
EREREKMGRG RVELKRIENK INRQVTFAKR RNGLLKKAYE LSVLCDAEVA LIIFSNRGKL 60 YEFCSSSSML KTLERYQKCN YGAPEPNVST REALQEISSQ QEYLKLKARY EALQRSQRNL 120 LGEDLGPLNS KELESLERQL DMSLKQIRST RTQLMLDQLT DLQRKEQALN EANKSLKQRL 180 MEGNQISLQW NPNPQDVGYG RQGGQPQGDG FFHPLECEPT LQIGYQNDPI TGAGPSVNNY 240 MAGWLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 7e-46 | 81 | 183 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-46 | 81 | 183 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-46 | 81 | 183 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-46 | 81 | 183 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00605 | ChIP-seq | Transfer from AT1G24260 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096723.1 | 1e-164 | agamous-like MADS-box protein AGL9 homolog isoform X2 | ||||
Swissprot | Q03489 | 1e-162 | AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog | ||||
TrEMBL | A0A068UXU4 | 1e-163 | A0A068UXU4_COFCA; Uncharacterized protein | ||||
TrEMBL | E9JPX2 | 1e-163 | E9JPX2_COFAR; MADS-box protein AGL2 subfamily | ||||
STRING | Solyc05g015750.2.1 | 1e-161 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Publications ? help Back to Top | |||
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