PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_659_iso_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28212 Da    PI: 9.0784
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_659_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-311565151
                                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  cra_locus_659_iso_7_len_817_ver_3 15 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 65
                                       79***********************************************96 PP

2K-box94.41.8e-319518213100
                              K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                        ++ s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++l+l+q+ +lq+ke++l+
  cra_locus_659_iso_7_len_817_ver_3  95 QEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDLQRKEQALN 170
                                        55689*********************************************************************** PP

                              K-box  89 eenkaLrkklee 100
                                        e+nk+L+++l+e
  cra_locus_659_iso_7_len_817_ver_3 171 EANKSLKQRLME 182
                                        ********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.515767IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-41766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-33881IPR002100Transcription factor, MADS-box
CDDcd002655.46E-45882No hitNo description
PRINTSPR004048.9E-33929IPR002100Transcription factor, MADS-box
PROSITE patternPS003500963IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-332944IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-334465IPR002100Transcription factor, MADS-box
PfamPF014865.4E-2695180IPR002487Transcription factor, K-box
PROSITE profilePS5129715.26396187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
EREREKMGRG RVELKRIENK INRQVTFAKR RNGLLKKAYE LSVLCDAEVA LIIFSNRGKL  60
YEFCSSSSML KTLERYQKCN YGAPEPNVST REALQEISSQ QEYLKLKARY EALQRSQRNL  120
LGEDLGPLNS KELESLERQL DMSLKQIRST RTQLMLDQLT DLQRKEQALN EANKSLKQRL  180
MEGNQISLQW NPNPQDVGYG RQGGQPQGDG FFHPLECEPT LQIGYQNDPI TGAGPSVNNY  240
MAGWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-46811831104Developmental protein SEPALLATA 3
4ox0_B7e-46811831104Developmental protein SEPALLATA 3
4ox0_C7e-46811831104Developmental protein SEPALLATA 3
4ox0_D7e-46811831104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096723.11e-164agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ034891e-162AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A068UXU41e-163A0A068UXU4_COFCA; Uncharacterized protein
TrEMBLE9JPX21e-163E9JPX2_COFAR; MADS-box protein AGL2 subfamily
STRINGSolyc05g015750.2.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Immink RG,Gadella TW,Ferrario S,Busscher M,Angenent GC
    Analysis of MADS box protein-protein interactions in living plant cells.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(4): p. 2416-21
    [PMID:11854533]
  2. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  3. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]
  4. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]