PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_65717_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25494.5 Da    PI: 9.6372
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_65717_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-26243950
                                         HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                               SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                         rqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  cra_locus_65717_iso_1_len_661_ver_3  2 RQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 43
                                         9****************************************8 PP
2K-box98.21.2e-3264157699
                                K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                                           +sl+ea+++ +qqe+akL+++i+ +q+++R++lG++++s+ lk+L+++e ++ek++ kiR++Knell+++i+ 
  cra_locus_65717_iso_1_len_661_ver_3  64 CVSLSEANTQFYQQEAAKLRRQIRDIQNSNRQMLGDGVSSMPLKDLKSMEGKVEKAIGKIRTRKNELLYAEIDL 137
                                          56699********************************************************************* PP

                                K-box  80 lqkkekelqeenkaLrkkle 99 
                                          +qk+e elq++n++Lr+k+ 
  cra_locus_65717_iso_1_len_661_ver_3 138 MQKRELELQHANMYLRTKIV 157
                                          ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-21145IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.063146IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-25259IPR002100Transcription factor, MADS-box
CDDcd002656.08E-33263No hitNo description
PfamPF003195.6E-23242IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-19823IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-192344IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2470156IPR002487Transcription factor, K-box
PROSITE profilePS5129713.76172162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
XRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VVFSSRGRLY EYANSSVRTT IERYKKTTSD  60
GANCVSLSEA NTQFYQQEAA KLRRQIRDIQ NSNRQMLGDG VSSMPLKDLK SMEGKVEKAI  120
GKIRTRKNEL LYAEIDLMQK RELELQHANM YLRTKIVESE KVVEMRSDYH PMPSSSHHYD  180
VRNFLPMNLM DSSTQHQTAL HLVXQMECRG TTPAEILKIN X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-152541668MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-152541668MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-152541668MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-152541668MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P6e-152541769Myocyte-specific enhancer factor 2B
1tqe_Q6e-152541769Myocyte-specific enhancer factor 2B
1tqe_R6e-152541769Myocyte-specific enhancer factor 2B
1tqe_S6e-152541769Myocyte-specific enhancer factor 2B
6c9l_A6e-152541769Myocyte-specific enhancer factor 2B
6c9l_B6e-152541769Myocyte-specific enhancer factor 2B
6c9l_C6e-152541769Myocyte-specific enhancer factor 2B
6c9l_D6e-152541769Myocyte-specific enhancer factor 2B
6c9l_E6e-152541769Myocyte-specific enhancer factor 2B
6c9l_F6e-152541769Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082936.11e-99floral homeotic protein AGAMOUS
SwissprotQ93XH46e-90MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLQ2WBM31e-102Q2WBM3_9LAMI; Plena protein
STRINGevm.model.supercontig_50.737e-93(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]