PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_655_iso_5
Common NameGLO1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19336.2 Da    PI: 9.3557
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_655_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                       krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+++gk++ey+s
  cra_locus_655_iso_5_len_760_ver_3  9 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYIS 59
                                       79***********************************************86 PP
2K-box85.51.1e-2871160190
                              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                                        yqk++gk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL++keL+ Le++Le+++++iR++++e+++  
  cra_locus_655_iso_5_len_760_ver_3  71 YQKATGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNHKELMVLEDALENGISSIRDRQSEIVKIA 146
                                        8999********************************************************************9988 PP

                              K-box  77 ieelqkkekelqee 90 
                                         ++ q  e+e+++ 
  cra_locus_655_iso_5_len_760_ver_3 147 RKNGQILEEENKQL 160
                                        88888888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-36296IPR002100Transcription factor, MADS-box
CDDcd002651.02E-38280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.2E-1982161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.81884167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFGT SGKMHEYISP  60
STNLIDMLDA YQKATGKKLW DAKHENLSNE IDRVKKENDS MQIELRHLKG EDITSLNHKE  120
LMVLEDALEN GISSIRDRQS EIVKIARKNG QILEEENKQL QYFWLMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-18191183MEF2 CHIMERA
6bz1_B4e-18191183MEF2 CHIMERA
6bz1_C4e-18191183MEF2 CHIMERA
6bz1_D4e-18191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089801.11e-103floral homeotic protein PMADS 2-like
RefseqXP_027150624.11e-103floral homeotic protein PMADS 2-like
RefseqXP_027156423.11e-104floral homeotic protein PMADS 2-like, partial
SwissprotQ074745e-96MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLF4ZZ991e-115F4ZZ99_CATRO; Putative GLO1
STRINGXP_009803901.11e-95(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Su YT,Chen JC,Lin CP
    Phytoplasma-induced floral abnormalities in Catharanthus roseus are associated with phytoplasma accumulation and transcript repression of floral organ identity genes.
    Mol. Plant Microbe Interact., 2011. 24(12): p. 1502-12
    [PMID:21864044]
  3. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]