PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_65391_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 126aa MW: 14031.3 Da PI: 5.2162

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_65391_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	8	49	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ ++++++lG++ W++Ia++++ gRt++++k++w+++ cra_locus_65391_iso_1_len_377_ver_3 8 LSQAEEKMVIELHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 49 5899*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-22	1	54	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.983	1	54	IPR017930	Myb domain
SuperFamily	SSF46689	2.42E-14	2	60	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-14	4	52	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-15	8	49	IPR001005	SANT/Myb domain
CDD	cd00167	9.11E-12	9	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
PDLKRGLLSQ AEEKMVIELH ARLGNRWSKI AARLPGRTDN EIKNHWNTHI KKKLLKMGID 60 PVTHEPLINK EENSIDQPIP EFDQNNDQVV LENTSFTAVA TSSELDNSST SSSSASSSEN 120 SCNESX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-14	1	54	55	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788709.1	4e-55	PREDICTED: protein ODORANT1-like
Refseq	XP_016453701.1	4e-55	PREDICTED: protein ODORANT1-like
Swissprot	Q50EX6	2e-48	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A1S3YN32	1e-53	A0A1S3YN32_TOBAC; protein ODORANT1-like
TrEMBL	A0A1U7XP34	1e-53	A0A1U7XP34_NICSY; protein ODORANT1-like
STRING	XP_009788709.1	2e-54	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]