PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6451_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 567aa MW: 62732.7 Da PI: 9.729

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6451_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.4e-11	383	441	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK+ +i eLe kv++L++e ++L +l l+k +l++++ cra_locus_6451_iso_1_len_1936_ver_3 383 KRAKRILANRQSAARSKERKLRYICELEHKVQTLQTEATTLSAQLTILQKDFTELTNQN 441 9****************************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	379	443	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	381	444	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-9	383	440	No hit	No description
Pfam	PF00170	1.3E-9	383	441	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.47E-11	383	439	No hit	No description
CDD	cd14703	7.80E-23	384	435	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
XGKKVSSVRK LDIQMRFDFF IQRVLLNHYC DIQGXRIRGF VQKRLYSGLV VKRFWMAQLN 60 AKQSVSQNYG LGGSHSRSSS QPQFFSNNCL PPLSPLHHSE SSLASSSSIK DVSMEEMDVS 120 SQGPASVGSS YRCENAFRGN FESLPPRKGH RRSNSDVPLG FNAMIQTSPQ LVPISGQGVL 180 GKSSSGNNKF ALDKPIRLQM LEMDTFSDTK NHVEGIGDRK LPGEVVEDLF QSYMNLEKTD 240 RFSGSSSGSI DKGSTFSSTK RSGGNITNNE GENISKRNDP AIEGMDAREG IKRSAAGDIA 300 PTPRHFRSLS VDSAFGNLNF GDESPKFPPS SGNGIGQFSP SNLMNENMAK LSLDYGNGEF 360 SDAEVKKIMS DERLAEIALS DPKRAKRILA NRQSAARSKE RKLRYICELE HKVQTLQTEA 420 TTLSAQLTIL QKDFTELTNQ NNELKFRLKA MEQQAQLRDA CAVALHEALT GEVQRLKLVA 480 AEFTENGGSS SRTMQQMPMK HHMLQMQQRH PSNQRQQIPV STSKTSTTSS ATPASAXSMA 540 GNGADRYASF LDEYENIFRI SIKACWH

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

XGKKVSSVRK LDIQMRFDFF IQRVLLNHYC DIQGXRIRGF VQKRLYSGLV VKRFWMAQLN  60
AKQSVSQNYG LGGSHSRSSS QPQFFSNNCL PPLSPLHHSE SSLASSSSIK DVSMEEMDVS  120
SQGPASVGSS YRCENAFRGN FESLPPRKGH RRSNSDVPLG FNAMIQTSPQ LVPISGQGVL  180
GKSSSGNNKF ALDKPIRLQM LEMDTFSDTK NHVEGIGDRK LPGEVVEDLF QSYMNLEKTD  240
RFSGSSSGSI DKGSTFSSTK RSGGNITNNE GENISKRNDP AIEGMDAREG IKRSAAGDIA  300
PTPRHFRSLS VDSAFGNLNF GDESPKFPPS SGNGIGQFSP SNLMNENMAK LSLDYGNGEF  360
SDAEVKKIMS DERLAEIALS DPKRAKRILA NRQSAARSKE RKLRYICELE HKVQTLQTEA  420
TTLSAQLTIL QKDFTELTNQ NNELKFRLKA MEQQAQLRDA CAVALHEALT GEVQRLKLVA  480
AEFTENGGSS SRTMQQMPMK HHMLQMQQRH PSNQRQQIPV STSKTSTTSS ATPASAXSMA  540
GNGADRYASF LDEYENIFRI SIKACWH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090093.1	0.0	transcription factor RF2a-like isoform X1
TrEMBL	A0A068UGL3	0.0	A0A068UGL3_COFCA; Uncharacterized protein
STRING	XP_009610158.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1265	24	78