PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_64452_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 102aa    MW: 12169.9 Da    PI: 10.9602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_64452_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.6e-20862256
                                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                         +++++f+++q++ Le +Fe++ ++  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  cra_locus_64452_iso_1_len_304_ver_3  8 KNKRRFNDDQIKSLEIMFESETKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 62
                                         67789*************************************************9 PP
2HD-ZIP_I/II121.93.2e-399100293
                          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                                          +krr++++q+k+LE +Fe+e+kLep++K +la+eLglqprqva+WFqn+RAR+k+kq+Ekdy  L ++y+al++
  cra_locus_64452_iso_1_len_304_ver_3   9 NKRRFNDDQIKSLEIMFESETKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQIEKDYGILLSNYNALAS 82 
                                          79************************************************************************ PP

                          HD-ZIP_I/II  76 enerLekeveeLreelke 93 
                                          + ++L+ke+++L  +l++
  cra_locus_64452_iso_1_len_304_ver_3  83 QFDSLKKENQSLLLQLQK 100
                                          ************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.75464IPR001356Homeobox domain
SuperFamilySSF466896.68E-18575IPR009057Homeodomain-like
SMARTSM003898.2E-17668IPR001356Homeobox domain
PfamPF000463.1E-17862IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-19967IPR009057Homeodomain-like
CDDcd000864.55E-121365No hitNo description
PRINTSPR000312.7E-63544IPR000047Helix-turn-helix motif
PROSITE patternPS0002703962IPR017970Homeobox, conserved site
PRINTSPR000312.7E-64460IPR000047Helix-turn-helix motif
PfamPF021832.5E-1564102IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.5.4004.1E-468101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
XSKKKRSKNK RRFNDDQIKS LEIMFESETK LEPRKKLQLA KELGLQPRQV AIWFQNKRAR  60
WKSKQIEKDY GILLSNYNAL ASQFDSLKKE NQSLLLQLQK LT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410KRSKNKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341790.11e-51homeodomain/HOMEOBOX transcription factor
RefseqXP_028239346.11e-51homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-45ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLC6TNE47e-52C6TNE4_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA07G05800.15e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]