PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6371_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28015.9 Da PI: 9.5276 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.2e-19 | 39 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G+++W++I++++ gR++k+c++rw + cra_locus_6371_iso_1_len_1340_ver_3 39 KGPWSAEEDKILTRLVEKYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 84 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 93 | 135 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ cra_locus_6371_iso_1_len_1340_ver_3 93 PFSSSEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 135 799*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.585 | 34 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-32 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-19 | 39 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-15 | 41 | 83 | No hit | No description |
SMART | SM00717 | 3.4E-15 | 90 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.972 | 91 | 140 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.3E-14 | 93 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.61E-11 | 93 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 93 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDSFYRCSST TAAATSSSSD SSSSDSSGRK NGTKPERIKG PWSAEEDKIL TRLVEKYGPR 60 NWSLISKYIK GRSGKSCRLR WCNQLSPNVE HRPFSSSEDE TILAAHAKYG NRWATIARLL 120 PGRTDNAVKN HWNSTLKRRY QQQNQNHQQE IQIIGGANVK NDDVSRSVSV NNSSSSRVFP 180 LVDYDESDPM TILSLAPPGY HELPATTTTT ERQQAENFPA GFWDAMKNVI AREVREYVAS 240 SFSATSSSGF H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-43 | 35 | 139 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-43 | 35 | 139 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153939.1 | 1e-115 | transcription factor MYB77-like | ||||
TrEMBL | A0A068UH83 | 1e-113 | A0A068UH83_COFCA; Uncharacterized protein | ||||
STRING | XP_008220156.1 | 1e-94 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |