PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6357_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SBP

Protein Properties

Length: 336aa MW: 37250.4 Da PI: 8.5945

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6357_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.5e-41	26	102	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 C v+gC+adls+++eyhrrhkvCe hsk+++v++ g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk cra_locus_6357_iso_5_len_1660_ver_3 26 CLVDGCNADLSQCREYHRRHKVCELHSKTAKVTIGGREQRFCQQCSRFHSLAEFDEGKRSCRKRLDGHNRRRRK 99 ************************************************************************** PP --- CS SBP 76 kqa 78 +q+ cra_locus_6357_iso_5_len_1660_ver_3 100 PQP 102 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-33	21	87	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.069	23	100	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-38	24	104	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-30	26	99	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MESSASLSGS SKRAKALGSI SQVAHCLVDG CNADLSQCRE YHRRHKVCEL HSKTAKVTIG 60 GREQRFCQQC SRFHSLAEFD EGKRSCRKRL DGHNRRRRKP QPELSRNSGL LFSSPQGTRL 120 LSFSPPQIFP SAVVSSTWTA AVKPENDVVL FNNQSNLNYV DRQNSFPESS SSVHSYKGVN 180 RFQFMQVTDN NHLPEASICQ PLLDPNARSG HTNSGQKMFS DGLNQVIHSD RALSLLSSAT 240 AVTREIGFSP MVQQQQQPES IPPTAQQSLA HHSHSLHYGS PGQFPFAPEL ENNKPVVSET 300 QSQVSSNATL HFQEMFQTGP DESSTSGSHQ TLTFLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	26	99	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	99	KRSCRKRLDGHNRRRRKP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00555	DAP	Transfer from AT5G50570	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097264.1	1e-167	squamosa promoter-binding-like protein 16
Refseq	XP_027097265.1	1e-167	squamosa promoter-binding-like protein 16
Refseq	XP_027097266.1	1e-167	squamosa promoter-binding-like protein 16
Refseq	XP_027097267.1	1e-167	squamosa promoter-binding-like protein 16
Refseq	XP_027099756.1	1e-167	squamosa promoter-binding-like protein 16
Refseq	XP_027099757.1	1e-167	squamosa promoter-binding-like protein 16
Refseq	XP_027099758.1	1e-167	squamosa promoter-binding-like protein 16
TrEMBL	A0A068UYH8	1e-165	A0A068UYH8_COFCA; Uncharacterized protein
STRING	XP_009764314.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4920	20	37