PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6296_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1122aa MW: 122590 Da PI: 4.9973 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00046 | 416 | 438 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++C+ F+++++L +H+ + H cra_locus_6296_iso_2_len_5197_ver_3 416 HCEKCNSNFNSRDDLLQHQLSsH 438 5******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.890.10 | 4.3E-4 | 277 | 335 | IPR001739 | Methyl-CpG DNA binding |
PROSITE profile | PS50982 | 9.775 | 281 | 353 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 6.21E-7 | 287 | 335 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 4.7E-5 | 289 | 333 | IPR001739 | Methyl-CpG DNA binding |
PROSITE profile | PS50157 | 11.448 | 415 | 443 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 415 | 438 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 417 | 438 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.265 | 460 | 487 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.34 | 460 | 482 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 462 | 482 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1122 aa Download sequence Send to blast |
MASATVESVT ATTGSAPSDI PLRLDSIPTV DLQLLSQSEL YSLSLCSPSI FDPRRCDDVV 60 IPKIDRSVFN ESAGSRKQTY YRLRLARSSD AASASSSIRC RTPHLRPASH NPHPHFLETD 120 PENAENRQIL ALLKQLFGVD SSISVKDDSM EELVPVRVDF SDTMPQLANV VSTGQKRKRG 180 RPRKNENAAI LVENKLESQC VNDVPLATNQ ILVYENVEDK DKDIVNRDGI EVDLIQLGSM 240 EDPYEEELWR KTEGMGTEEQ LLEFLKGLNG QWASRRKKKR IVDASLFGNA LPKGWRLLLS 300 CKRKDGRVWL FCRRYISPNG RQFVSCKEIS AYLLSLRGIP DANQQICVQS NAGATATDKM 360 TTAITADASL PNEKREEKPL CQTMSPAVTS ASGNYDVQIT MMPGDPPAVQ VGENLHCEKC 420 NSNFNSRDDL LQHQLSSHRR RRPKNGESVT DGVIIRGGKY ECQFCHKTFD ERHRYNGHVG 480 SHMRNQVRNS AESRAAHVEE FLGTGSSDPL PHGNTIVQPA IGLESNVAAQ NVRSGSDDPP 540 NPCTDEQNGD SRDLNDYLGT VDNSMDVDVT KSKICFDSVT VLSNNENSNY CEASSGANVI 600 KNAVDGIEKS CNAQERSSDA CSPFSLDKPV DSDTNAITFV EPKISGSVSR SSNEQMESCD 660 IDLDGGDFSR TMGEFKLEEN KVVDDGTLFG LCDRNGGVND SGAIGYKQHD QSPSDIGEAN 720 GKSISTAAGS EQKIFSAGTM LAPSSDGKED GDRDRFGAFP GSTLEGGEHN QTGLCGSKGH 780 QSDKHAQEER GIGSSRIVPT WNETGNGTGM FNKEVSVGII EGHQQPKSSE SNLPSLSGFN 840 GSYGVEDYFN KVSTREVQQP KVNDVHNMRN NELVFSFSTG SGEIGTDATN KNKHEGGFEF 900 RAFFPPENGK VFSAENNGMS VQNHAGEESK KEPSGSVLLA QPRLAESSGE VYNVNKIFGT 960 QVDEHRSNII GNSKSHELCL AFSNQADSSG VELEKYGAKS FDIHSGINQS YGTQNNLNMG 1020 NVAPKEGRAF GIDLHGFSDK TSVFENNFNM VYPGRVWEEP KVDDGGNSGN KFMVGFGNSV 1080 PQPVEDVLAG SIWRTGEENL LRSDLTDPST XSNSVIKWLP YL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 274 | 279 | RRKKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027091621.1 | 0.0 | uncharacterized protein LOC113712406 | ||||
TrEMBL | A0A068TXS5 | 0.0 | A0A068TXS5_COFCA; Uncharacterized protein |