PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6272_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 644aa MW: 72592.3 Da PI: 6.5555

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6272_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	32.6	1.6e-10	421	484	21	51
RWP-RK 21 AAkeLg.................................vclTvLKriCRqyGIkRWPhRkiks 51 AA +Lg ++ ++LKriCR++GI+RWP+ k k+ cra_locus_6272_iso_1_len_2316_ver_3 421 AAECLGgklvaenddmfifhnnssysxmklifvcivsnaISRSTLKRICRKLGIRRWPSYKRKK 484 555555555555555555555555555556666666666899****************977666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	4.4E-4	34	104	IPR029016	GAF domain-like
Pfam	PF02042	1.2E-9	419	485	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-9	555	615	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.5E-10	558	617	No hit	No description
CDD	cd05992	7.32E-7	559	614	No hit	No description
Pfam	PF00564	4.2E-6	561	615	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MEIVICSLPQ GHLFLLILNL MGFTNKDDLF DVNFSADDEN DVLGIPGRVF RNKLPEWTPN 60 VQYYSSKEYP LLTQASHYNI RGMLALPLFE SGGCCVGVLE IIMTSQKINY APYVDLLYKA 120 LEAMDLRSSE IFNLPCARVL DQNQEITISE ILEVLTVLCE TYRLPLAQTW MLCRHGHFST 180 HVRSLPPSNS FNRNYIDKVC LSSCDLAFYA VDAHMWGFRP ALSITFRGAR GVVGRAFSSL 240 DSCFSREITQ LSKADYLLVH YARMFGMQSC LAVPVSYSSP AETINILELF LPPHLTDCES 300 QNKLLADMRQ SCKNLRIVYH KELGEERDIK TINSPLEEKL VLGSEFYEIS QNIRSLETLK 360 SIDMPEASQT GKQKVKANSR EEQKMLELDA VDCERKTVKG LGNVSVSVPD KWTLEVIHQD 420 AAECLGGKLV AENDDMFIFH NNSSYSXMKL IFVCIVSNAI SRSTLKRICR KLGIRRWPSY 480 KRKKIKSGSG TSISEFIHGF ADHQQPEMLL ESFANEKSST GEEDVRDPSK ALRSPNLAVN 540 QEKAVTNVAT APCERALSIS ARYQHKTMKF PLTKTGLEQK LAEMLRLKLG TFMIKYLDTE 600 NDWILIACDG DLKDLTVVAC DGTIHMIDCP SKSIICKNSS EFDA

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MEIVICSLPQ GHLFLLILNL MGFTNKDDLF DVNFSADDEN DVLGIPGRVF RNKLPEWTPN  60
VQYYSSKEYP LLTQASHYNI RGMLALPLFE SGGCCVGVLE IIMTSQKINY APYVDLLYKA  120
LEAMDLRSSE IFNLPCARVL DQNQEITISE ILEVLTVLCE TYRLPLAQTW MLCRHGHFST  180
HVRSLPPSNS FNRNYIDKVC LSSCDLAFYA VDAHMWGFRP ALSITFRGAR GVVGRAFSSL  240
DSCFSREITQ LSKADYLLVH YARMFGMQSC LAVPVSYSSP AETINILELF LPPHLTDCES  300
QNKLLADMRQ SCKNLRIVYH KELGEERDIK TINSPLEEKL VLGSEFYEIS QNIRSLETLK  360
SIDMPEASQT GKQKVKANSR EEQKMLELDA VDCERKTVKG LGNVSVSVPD KWTLEVIHQD  420
AAECLGGKLV AENDDMFIFH NNSSYSXMKL IFVCIVSNAI SRSTLKRICR KLGIRRWPSY  480
KRKKIKSGSG TSISEFIHGF ADHQQPEMLL ESFANEKSST GEEDVRDPSK ALRSPNLAVN  540
QEKAVTNVAT APCERALSIS ARYQHKTMKF PLTKTGLEQK LAEMLRLKLG TFMIKYLDTE  600
NDWILIACDG DLKDLTVVAC DGTIHMIDCP SKSIICKNSS EFDA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26