PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6269_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28014.8 Da    PI: 8.5678
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6269_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  cra_locus_6269_iso_4_len_1147_ver_3  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                                         79***********************************************96 PP
2K-box942.4e-31811747100
                                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                          ++ ++  ++s+++e+akLk ++e+Lqr qRhllG+dL++L+l+eL +Le+qLe+slk iRs++++++l+q+++l
  cra_locus_6269_iso_4_len_1147_ver_3  81 NQSAKDLEQSSYKEYAKLKTKYESLQRYQRHLLGDDLGPLNLNELDHLEHQLESSLKLIRSTRTQVMLDQLSDL 154
                                          55566668999*************************************************************** PP

                                K-box  81 qkkekelqeenkaLrkklee 100
                                          q kek   e+nkaL++klee
  cra_locus_6269_iso_4_len_1147_ver_3 155 QTKEKLWLEANKALERKLEE 174
                                          *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-33277IPR002100Transcription factor, MADS-box
CDDcd002653.95E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2684172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.55588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QRCSYGAVEV NQSAKDLEQS SYKEYAKLKT KYESLQRYQR HLLGDDLGPL  120
NLNELDHLEH QLESSLKLIR STRTQVMLDQ LSDLQTKEKL WLEANKALER KLEEIYTENH  180
LHQAWGGAEQ SSTYSQQHSQ SQGFFQPLEC SSSLQMGYNP ASSSQITAVT NAPNMNGLIP  240
GWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-28751721101Developmental protein SEPALLATA 3
4ox0_B2e-28751721101Developmental protein SEPALLATA 3
4ox0_C2e-28751721101Developmental protein SEPALLATA 3
4ox0_D2e-28751721101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074278.11e-166developmental protein SEPALLATA 1-like isoform X1
SwissprotQ8LLR21e-136MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A068U2D31e-165A0A068U2D3_COFCA; Uncharacterized protein
STRINGSolyc02g089200.2.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]